Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g0902 ATGGAGGATGATTGGGACTTGAGCGCGGAGGATCTTGATTCTCTCGAGAAAGACGCTTTCCAGAAGATTGCTCAACTACGTAACGCTTCTTCCTCTGCATCAGCTTCCTCTTCTACACCTTCCATTAGTCAACAACTGAATGTACATCAACAGCATTCTGCAAAACCTTGTAGCTACGAATTGCAGCCAGCCCCAGCAAAACCCATTTCCGACTCTCGTTCTGAAAGAGGTGAAACTTTGTCTTCACAGGCCAGAGTGTTACCATTGTCGGTGAGATCAGGAACAAACAACGATGAACATTCAAAAGAGATGCCCAAGCTTACTGTTAAACTTTTTCTTCATTCCAGTGGAGACATTGCAGCAAAATTTCATTATGACCAGGTAGTAATAGCTGCCGTCAGGAGAATCCCTAAGTCTACTTGGAATGCAAAAGAAAGGTTATGGATGTTTCCACTATCCTCTTTGTCAGTAGCAGAAAAGGTTCTTGCTGAAACATCTGGTAATAAGGTCGATAACCTAGACCCCTTAGTGCATCGGGCCATTGCTGCTGCATCTGCTGTTCCTGATCTTCGAGATCAATATGACAGGATCCCTAGCTACATTGAATCTAAACTTTTGCCATTTCAGCGAGAAGGTGTTAGGTTTATATTGCAGCATGGAGGTCGTGCTCTTTTAGCAGATGAAATGGGATTAGGGAAAACTTTGCAGGCTATTGCTGTAGCTTCATGTATTTCTGACTCATGGCCTGTCCTTATACTTGCACCATCTTCGTTACGTTTGCAATGGGCTTCTATGATTCAACAATGGCTGAAAATTCCTTCATCAGATATACTTGTTGTGCTATCTCAAAGTGGTGGATCAAATAGAGGAGGTTTCACGATAGTATCTTCAAATACTAAGAACAGTATTCATCTAGATGGACTATTCAACATCATCTCATATGATTTGGTTCCTAAGATACAGAATATGCTTATGGCATTTGACTTTAAGGTTGTGATTGCAGATGAATCACACTTTCTGAAAAATGCTCAAGCAAAGAGAACTACTGCTACTCTTCCAGTTATAAAGAAAGCTCAATATGCAATATTGCTTAGTGGAACTCCTGCTTTGTCTCGACCAATTGAACTATTCAAGCAGCTGGAAGCATTGTATCCTGATGTATTTAAAAATGTCCATGAATATGGTAACCGGTATTGCAAGGGTGGAATTTTTGGAGTTTATCAAGGTGCAAGTAACCATGAAGAATTGCATAATTTGATGAAGGCAACAGTGATGATTCGCAGGCTTAAAAAGGATGTTCTTTCTCAACTTCCTGTAAAGCGCAGGCAGCAGGTCTTCCTAGATTTGGCTGACAAGGACATGAAGCAAATCAATGCTTTATTTCGAGAGTTGGAGGTGATTAAAGCCAAAATTAAGGCAGCCAAATCAAAAGATGAGGCTGAATCACTGAAGTTTACTCAAAAGAATCTTATTAACAAGATATATACCGATTCTGCAGAAGCCAAGATCCCAGCAGTTCTTGATTATGTTGGAACTATTATTGAGGCGGGTTGCAAATTTCTTATATTTGCACACCATCAGCCAATGATAGATTCAATACATGATTTTCTTATTAAAAAAAAAGTAGGTTGCATCCGGATTGATGGCAGTACACCCCCTACATCTAGGCAAGCATTGGTTACAGATTTTCAGGAAAAAGATTCTATCAGGGCAGCAGTGCTATCTATCAAAGCTGGAGGAGTTGGGCTAACTTTAACTGCTGCAAGTACGGTCATTTTTGCAGAGTTGTCCTGGACTCCAGGTGACCTAATTCAAGCCGAAGACCGTGCTCACAGAATTGGCCAGGTATCTTCAGTAAATATATACTACTTGCTAGCAAATGACACGGTTGATGACATCATATGGGATGTAGTGCAGAACAAATTGGAAAATTTGGGGCAGATGTTAGATGGCCATGAGGATACATTGGAGGTCTCAACTAGTCAGCCAGGGAATAGCCCTGCAAAGCAGAAAACTCTTGACTCCTTTGTGAGAAGATGTAATAACATGGATGAACCAGAACAGCAGTCCAACCCCAAACGCCCCCGATACTGA 2094 0.4117 MEDDWDLSAEDLDSLEKDAFQKIAQLRNASSSASASSSTPSISQQLNVHQQHSAKPCSYELQPAPAKPISDSRSERGETLSSQARVLPLSVRSGTNNDEHSKEMPKLTVKLFLHSSGDIAAKFHYDQVVIAAVRRIPKSTWNAKERLWMFPLSSLSVAEKVLAETSGNKVDNLDPLVHRAIAAASAVPDLRDQYDRIPSYIESKLLPFQREGVRFILQHGGRALLADEMGLGKTLQAIAVASCISDSWPVLILAPSSLRLQWASMIQQWLKIPSSDILVVLSQSGGSNRGGFTIVSSNTKNSIHLDGLFNIISYDLVPKIQNMLMAFDFKVVIADESHFLKNAQAKRTTATLPVIKKAQYAILLSGTPALSRPIELFKQLEALYPDVFKNVHEYGNRYCKGGIFGVYQGASNHEELHNLMKATVMIRRLKKDVLSQLPVKRRQQVFLDLADKDMKQINALFRELEVIKAKIKAAKSKDEAESLKFTQKNLINKIYTDSAEAKIPAVLDYVGTIIEAGCKFLIFAHHQPMIDSIHDFLIKKKVGCIRIDGSTPPTSRQALVTDFQEKDSIRAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQNKLENLGQMLDGHEDTLEVSTSQPGNSPAKQKTLDSFVRRCNNMDEPEQQSNPKRPRY 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g0902 697 CDD SF2_C_SNF 501 625 - -
Bisa08g0902 697 SMART helicmild6 531 614 IPR001650 -
Bisa08g0902 697 MobiDBLite consensus disorder prediction 75 95 - -
Bisa08g0902 697 FunFam Chromatin remodeling factor18 463 693 - -
Bisa08g0902 697 Gene3D - 178 453 IPR038718 -
Bisa08g0902 697 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 2 689 - -
Bisa08g0902 697 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 428 IPR027417 -
Bisa08g0902 697 MobiDBLite consensus disorder prediction 26 102 - -
Bisa08g0902 697 MobiDBLite consensus disorder prediction 26 57 - -
Bisa08g0902 697 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 328 658 IPR027417 -
Bisa08g0902 697 Gene3D - 468 691 IPR027417 -
Bisa08g0902 697 Pfam SNF2-related domain 223 484 IPR000330 GO:0005524|GO:0140658
Bisa08g0902 697 ProSiteProfiles HARP domain profile. 103 175 IPR010003 -
Bisa08g0902 697 FunFam Chromatin remodeling factor18 178 452 - -
Bisa08g0902 697 Coils Coil 457 477 - -
Bisa08g0902 697 Pfam Helicase conserved C-terminal domain 514 614 IPR001650 -
Bisa08g0902 697 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 214 386 IPR014001 -
Bisa08g0902 697 SMART ultradead3 201 394 IPR014001 -
Bisa08g0902 697 CDD DEXHc_HARP_SMARCAL1 205 428 - -
Bisa08g0902 697 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 506 657 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g0902 Bisa-ChrBisa08 16277557 16299458 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g0902 485 645 RAD5 or RAD16-like Gene Family AT1G02670 32.121 1.10e-17 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bisa08g0902 SNF2_N 1.5e-28 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa08g0902 08 16277557 16299458 Bisa08g0902 08 16277557 16299458 ECH