Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g0873 ATGGGAATTATGATGAGAACACAAGAGTTGGTGAGAGTTTTTGCAGTAGGATCATGGGTAATAGTAATACTATCCATGCTATTAGGAGGAGAGGCTGCCATGGATGGTTACCCAGCAGAGCAGGCTCACTATGAATGCAGCCTTACCAGATATCCTAATCTGTGTGATCAAACCTTGAGGGAAATGGGGTCTGGGAATCAAAGTGTCGATATCATTTCAGCCCTTATTCGCAAAGCCATATCTGAAACCAACCTCCCAACCACATTTTTTGCACAGTTTGAAGCTCCCCAGTCTGTCGACACAGGGTATTGCTCCGAGCTGATGAGCATGTCAGTGAAGAGGTTGAAACAGTCCCTGGAAGCCCTGAAATCCCCAGCCACAAACAAACACAACCTCCAAACCTGGCTCAGTGCTTCCCTCACCTTCCTTCAATCTTGCAAAGACTACTCACTTTCATATTCACATTCAAGCATTTCAGTGAAGATGGACTATCTCTCTCAACTGGGAAGCAACCCACTAGCCCTCGTCAACCGAATGACGTCACCAAAACGACGCCGTCCCCAACAAGATCGATTTCCTGCGTGGGTATCGGCGGAGGAGCGAAAGCTAGTGGATGGAGCTGGGAGCGTGAAGGCGAATGCCGTGGTGGCGCAAGATGGGAGTGGGAATTACAGGACGGTGTCGGAGGCGGTTGAGGCTGCGCCGGGGACGTCGAGGTTTGTGATATATGTGAAGGAAGGGGTTTACAAGGAGAAGATTCGAAGCAGCAAGGATGGGATTACGTTAGTTGGAGATGGTAAATATTCGACTGTCATTGTTGGTGATCACAGTGTTGCTCGTGGCACTTCCTTAGCTGCCTCTGCTACTTTTACAATCGACGGCGACGGGTTCATCGCGCGAGACATAGGGTTCCACAACAACGCCGGCCCGGAGGGCCAACAAGCGGTGGCTCTGAACATCGCCTCCGATCGTTCGGTGCTGTACAGGTGCAGCATCGCAGGCTACCAGGACACTCTGTACGCCCACGCTCTTCGGCAGTTCTACAGGGAGTGCGACATCTACGGCACCATCGACTTCATCTTCGGGAACGCCGCAGCCGTCTTCCAGAGCTGCAATCTGGTGCTCCGTCGTCCCCACAGCGGAGGCTACAACGCCATTCTCGCCAACGGCAGAACCGATCCCGGTCAGAACACCGGCTTCTCCGTTCAAAAGTGTAGCATCGGGGCCGGATCTGATTTCTCTGCTGTGAAACGTTCGTACAGTTCATACCTTGGAAGGCCCTGGAAGGAGTATTCTAGGTCGGTGGTGATGGAGTCCACCATCGATGATGCTATTGCAGGTAGGGGATGGATAGAATGGCCTGGCTATGGGAGCTCAGTGTTGAAGACACTGTATTTTGCAGAGTATGCAAACGAAGGTCCTGGTGCTGGCACTGCCCAGAGGGTGCGATGGCCTGGCTTTCATGTCATCGGAGCCGACGAGGCAGTGAAGTTCACCGTCGGAAGCTTCATCGCCGGAACTTCATGGATTCCCTCCACTGGAGTCACCTTCATTTCCGGCCTCAACTAA 1569 0.5252 MGIMMRTQELVRVFAVGSWVIVILSMLLGGEAAMDGYPAEQAHYECSLTRYPNLCDQTLREMGSGNQSVDIISALIRKAISETNLPTTFFAQFEAPQSVDTGYCSELMSMSVKRLKQSLEALKSPATNKHNLQTWLSASLTFLQSCKDYSLSYSHSSISVKMDYLSQLGSNPLALVNRMTSPKRRRPQQDRFPAWVSAEERKLVDGAGSVKANAVVAQDGSGNYRTVSEAVEAAPGTSRFVIYVKEGVYKEKIRSSKDGITLVGDGKYSTVIVGDHSVARGTSLAASATFTIDGDGFIARDIGFHNNAGPEGQQAVALNIASDRSVLYRCSIAGYQDTLYAHALRQFYRECDIYGTIDFIFGNAAAVFQSCNLVLRRPHSGGYNAILANGRTDPGQNTGFSVQKCSIGAGSDFSAVKRSYSSYLGRPWKEYSRSVVMESTIDDAIAGRGWIEWPGYGSSVLKTLYFAEYANEGPGAGTAQRVRWPGFHVIGADEAVKFTVGSFIAGTSWIPSTGVTFISGLN 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g0873 522 SMART PMEI_2 37 175 IPR006501 GO:0004857
Bisa08g0873 522 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 46 180 IPR035513 -
Bisa08g0873 522 Gene3D - 207 521 IPR012334 -
Bisa08g0873 522 SUPERFAMILY Pectin lyase-like 210 520 IPR011050 -
Bisa08g0873 522 CDD PMEI-like_3 46 181 - -
Bisa08g0873 522 FunFam Pectinesterase 207 521 - -
Bisa08g0873 522 Gene3D Invertase/pectin methylesterase inhibitor family protein 43 181 IPR035513 -
Bisa08g0873 522 PANTHER PECTINESTERASE 24 511 - -
Bisa08g0873 522 Pfam Pectinesterase 213 506 IPR000070 GO:0030599|GO:0042545
Bisa08g0873 522 ProSitePatterns Pectinesterase signature 2. 353 362 IPR033131 -
Bisa08g0873 522 Pfam Plant invertase/pectin methylesterase inhibitor 46 175 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g0873 Bisa-ChrBisa08 15659626 15665012 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g0873 21 521 Carbohydrate Esterase AT2G45220 44.358 9.04e-136 401