Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g0844 ATGGGGACGAAGAGAAGCGAGACTCCCAGTAAAGAAGTTATGGAAAAGAAGGCTAAGAGGAAGGAAGCTGTGAACGATGAAAGTCAAAAAGGCACTATTTTTGCGTCTTGCTCTTTCTCTAGCCTAGGACTCCACCCTACCTTATGCGACGAGCTCCGTGAGCGGATGGGTTTTGAAGTGCCAACCTTAGTACAAGCTCAAGCCATTCCGGTTATTATCTCAGGGCGTCATGTACTAGTTAATGCTGCCACGGGCACTGGGAAGACTGTTGCATACTTGGCTCCAATTATTCATCATTTGCAGAATTATGATAATAGAATCCAGCGGTCTGATGGAACATATGCGTTGGTTCTTGTACCAACGCGTGAGCTATGTTTGCAGGTTTATGAAATTCTTCAGAAGTTATTGCATCGATTTCACTGGATTGTACCCGGATACATAATGGGTGGTGAAAATAGATCAAAGGAAAAAGCCAGGCTGCGTAAAGGCATATCAATTCTTGTAGCAACTCCTGGGCGCCTCTTAGATCACATGAATAATACATCATCATTCTTGTACACAAATTTGCGCTGGATAATCTTTGATGAGGCTGATCGGATTCTGGAATTAGGATTTGGAAAAGAAATAAAGGAAATACTAGATCATTTAGGTACAACGAAAACAGGTTATGCTAACCAAGAGAATGCAGTTTCAAGACACCCTGGTCGTCCAAGACAGAATTTGCTTTTATCAGCTACTTTAAATGAAAAAGTGAATCATCTTGCTAAAATTAGTTTAGAGAATCCTGTGATGATTGGTCTTGATGGCAAAAGAATAGAACCAATTTCAACAATCGAAAGCCTTGGTTCGTCAGAATCTGATGTGGACAGTGAGGACAATGAATACAATGAAGAGAAAAATCCCAGTAAAATACTGAGCTCACCGGTTGGAGATTATAAAGTCCCCACACAATTGATTCAGAGATATGTTAAAGTACCTTGTGGTTCGCGTATCGCTATACTCCTTTCCATTCTGAAGCATTTTTTTGAAAAGCAAGCTTCACAAAAGATTGTGGTATTCTTTTCAACATGCGATGCAGTAGACTTTCACTTTTCACTGTTAAGTGAATTCCAATTTTCGTTCCATCCACAATCAGAAGCAGATATCCAACAGATGTTTCTGGGCTGCAAAATGTTTCGTTTGCATGGGAATATGGATCAGGAGGACCGGAGGAAAACTTTTCAGTCTTTTAAAACAGAGAAATCAGCTCTGCTCTTTTCCACTGATGTAGCTGCTAGAGGCTTGGATTTTCCTAAAGTTAGATGCATTATACAATATGATTCTCCTGGGGAAGCTACTGAATATGTGCATAGAGTTGGTAGAACTGCTCGGCTGGGTGAAAGAGGAGAGTCATTGTTATTTTTGCAGCCAGCTGAAATAGATTATTTGCAGGACTTGGAAAAACATGGTGTATCACTAACAGAGTATCCTCTCCTCAAAGTGTTGGATAGTTTCCCACTACATGGTCAAAGGAACAACGTCAAGAAGTTTGTTGCCATAGAGTCACATCCCTGGGTGGTTTGTCTCCAAAAGGCACTTGAATCCTTCATCATGTCAAAGCCCAAGATGGATTCACTTGCCAAGAAGGGGTTTTGCTCCTGGGTCCGAGCCTACACGGCCCATCGCGGCGATTTGAAAAAGATATTCATGATCAAGAAACTTCACTTGGGGCATGTGGCAAAAAGCTTTGCATTAAAACAACAACCTTCCTTAGTTGGAAAATCGTACCAGAAGCAAATCAAGAGGAAGAGATTTCAGAAGCGAAGTGGGCCTTCCAAAAAGAGAAAGGTTACTAGTGTAAAGTAG 1845 0.4125 MGTKRSETPSKEVMEKKAKRKEAVNDESQKGTIFASCSFSSLGLHPTLCDELRERMGFEVPTLVQAQAIPVIISGRHVLVNAATGTGKTVAYLAPIIHHLQNYDNRIQRSDGTYALVLVPTRELCLQVYEILQKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILVATPGRLLDHMNNTSSFLYTNLRWIIFDEADRILELGFGKEIKEILDHLGTTKTGYANQENAVSRHPGRPRQNLLLSATLNEKVNHLAKISLENPVMIGLDGKRIEPISTIESLGSSESDVDSEDNEYNEEKNPSKILSSPVGDYKVPTQLIQRYVKVPCGSRIAILLSILKHFFEKQASQKIVVFFSTCDAVDFHFSLLSEFQFSFHPQSEADIQQMFLGCKMFRLHGNMDQEDRRKTFQSFKTEKSALLFSTDVAARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGERGESLLFLQPAEIDYLQDLEKHGVSLTEYPLLKVLDSFPLHGQRNNVKKFVAIESHPWVVCLQKALESFIMSKPKMDSLAKKGFCSWVRAYTAHRGDLKKIFMIKKLHLGHVAKSFALKQQPSLVGKSYQKQIKRKRFQKRSGPSKKRKVTSVK 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g0844 614 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 265 IPR027417 -
Bisa08g0844 614 SMART helicmild6 376 459 IPR001650 -
Bisa08g0844 614 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 193 201 IPR000629 -
Bisa08g0844 614 Gene3D - 329 608 IPR027417 -
Bisa08g0844 614 Gene3D - 3 268 IPR027417 -
Bisa08g0844 614 PANTHER RNA HELICASE 22 531 - -
Bisa08g0844 614 MobiDBLite consensus disorder prediction 281 302 - -
Bisa08g0844 614 CDD DEADc_DDX31 48 266 - -
Bisa08g0844 614 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 69 265 IPR014001 -
Bisa08g0844 614 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 337 506 IPR001650 -
Bisa08g0844 614 CDD SF2_C_DEAD 318 468 - -
Bisa08g0844 614 SMART ultradead3 57 278 IPR014001 -
Bisa08g0844 614 MobiDBLite consensus disorder prediction 587 614 - -
Bisa08g0844 614 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 37 66 IPR014014 GO:0003724
Bisa08g0844 614 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 75 492 IPR027417 -
Bisa08g0844 614 MobiDBLite consensus disorder prediction 590 614 - -
Bisa08g0844 614 Pfam Domain of unknown function (DUF4217) 523 583 IPR025313 -
Bisa08g0844 614 Pfam DEAD/DEAH box helicase 63 253 IPR011545 GO:0003676|GO:0005524
Bisa08g0844 614 MobiDBLite consensus disorder prediction 1 25 - -
Bisa08g0844 614 SMART DUF4217_3 521 586 IPR025313 -
Bisa08g0844 614 Pfam Helicase conserved C-terminal domain 335 459 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g0844 Bisa-ChrBisa08 15106647 15111422 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g0844 38 490 Eukaryotic Initiation Factors Gene Family AT1G72730 25.110 2.98e-31 124