Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g0839 ATGCAGCAGCAGAGGCTAAAACAACATCCGATGATGCAGCAATCTCTCTACCACCACCCGGGTCTCCTTGCGGCCCCTCAGATAGAGCCTATTTTGAGTGGAAATCTGCCTCCTGGCTTTGATTCAAGTACATGCCGCAGTGTGTATGTTGGCAACATTCATCCTCAGGTTACAGAGTCCCTTCTTCAAGAGGTTTTTTCAAGTACAGGTCCCCTTGAAGGATGCAAGCTCATTAGGAAAGAGAAGTCTTCCTATGGATTTGTGGATTACTTTGATCGCAGATCAGCTGCTCTTGCTATTGTAACTCTTAACGGGAGGCATATTTTTGGGCTGCCTATAAAAGTTAATTGGGCATATGCTAGCAGTCAGAGGGAAGATACATCAGGTCACTATAATATTTTTGTTGGCGATCTTAGTCCTGAAGTTACAGATGCTACATTGTTTGCTTGCTTTTCTGGATATTCCAGTTGCTCAGATGCAAGGGTTATGTGGGATCAGAAGACAGGCCGCTCCAGGGGATTTGGTTTTGTTTCTTTTCAAAATCAGCAGGATGCCCAAAGTGCCATAAATGATTTAAATGGAAAGTGGCTTGGAAGTAGACAGATTCGTTGTAACTGGGCTACAAAAGGGGCCAATGCAAATGATGACAAGCAAAGTTCAGATTCCAGAAGTGTTGTGGAATTGACAAATGGAACAACAGAAGAAGGCCAAGAAAAGATCAGTGATGACACTCCTGAGAAGAATCCTCAATATACCACTGTCTATGTTGGCAATCTTGCTCCGGAGGTTACTTCTCTTGATCTACACCGTCATTTTCATGCACTTGGTGCTGGAACCATTGAAGATGTTCGGGTTCAAAGAGACAAAGGCTTTGGATTTGTGAGATACAGTACTCATGATGAAGCAGCTCTTGCCATACAGATGGGTAATGCACGGATTCTTTTTGGAAAACCTATCAAGTGCTCATGGGGTAGCAAGCCCACCCCTCCAGGAACAGTGTCTACCCCTCTTCCCCCTCCTGCAGCTGCCCATATGCCACCAGGCTTTACAGCCACTGATTTTGCAGCATATCACCGACAACTGGCTCTCAGCAAAATGGGTGGAGCACAGGCACTCATGCATCAGCAGAGTCAGCAAGCCCTGAAGCAGGCGGCCATCGGAATGGGTGCACCAGGGGCTAGTTATGATGCAGGATTCCCCGGTGTTGCAAGTACGCAGCACCTTATGTACTATCAGTAA 1239 0.4625 MQQQRLKQHPMMQQSLYHHPGLLAAPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQVTESLLQEVFSSTGPLEGCKLIRKEKSSYGFVDYFDRRSAALAIVTLNGRHIFGLPIKVNWAYASSQREDTSGHYNIFVGDLSPEVTDATLFACFSGYSSCSDARVMWDQKTGRSRGFGFVSFQNQQDAQSAINDLNGKWLGSRQIRCNWATKGANANDDKQSSDSRSVVELTNGTTEEGQEKISDDTPEKNPQYTTVYVGNLAPEVTSLDLHRHFHALGAGTIEDVRVQRDKGFGFVRYSTHDEAALAIQMGNARILFGKPIKCSWGSKPTPPGTVSTPLPPPAAAHMPPGFTATDFAAYHRQLALSKMGGAQALMHQQSQQALKQAAIGMGAPGASYDAGFPGVASTQHLMYYQ 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g0839 412 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 120 IPR000504 GO:0003723
Bisa08g0839 412 FunFam Oligouridylate-binding protein 1C 1 129 - -
Bisa08g0839 412 MobiDBLite consensus disorder prediction 211 235 - -
Bisa08g0839 412 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 244 380 - -
Bisa08g0839 412 SMART rrm1_1 47 116 IPR000504 GO:0003723
Bisa08g0839 412 SMART rrm1_1 132 205 IPR000504 GO:0003723
Bisa08g0839 412 SMART rrm1_1 253 322 IPR000504 GO:0003723
Bisa08g0839 412 CDD RRM1_PUB1 48 118 - -
Bisa08g0839 412 Gene3D - 130 229 IPR012677 -
Bisa08g0839 412 Gene3D - 230 330 IPR012677 -
Bisa08g0839 412 SUPERFAMILY RNA-binding domain, RBD 45 210 IPR035979 GO:0003676
Bisa08g0839 412 CDD RRM2_PUB1 130 209 - -
Bisa08g0839 412 Gene3D - 1 129 IPR012677 -
Bisa08g0839 412 FunFam oligouridylate-binding protein 1-like isoform X2 130 224 - -
Bisa08g0839 412 SUPERFAMILY RNA-binding domain, RBD 244 331 IPR035979 GO:0003676
Bisa08g0839 412 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 254 320 IPR000504 GO:0003723
Bisa08g0839 412 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 203 IPR000504 GO:0003723
Bisa08g0839 412 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 113 IPR000504 GO:0003723
Bisa08g0839 412 MobiDBLite consensus disorder prediction 211 249 - -
Bisa08g0839 412 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 252 326 IPR000504 GO:0003723
Bisa08g0839 412 FunFam Oligouridylate-binding protein 1C 229 330 - -
Bisa08g0839 412 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 209 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g0839 Bisa-ChrBisa08 14975325 14979762 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g0839 38 326 Eukaryotic Initiation Factors Gene Family AT1G49760 28.571 1.04e-28 116
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa08g0839 08 14975325 14979762 Bisa08g0839 08 14975325 14979762 ECH