Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g0787 ATGGAGCCGAAGCCCGTCGGAGAAGAAGATGCGGCGCAGAACGTTCGGTCACGAATCGGGTTCGAAGTGCCAGTAGCAGTTGTTCTCCGAGCTCTTTCAGAATCTGGGTTCGACCCAGATGCCGCCGTGAAGTTCCTCAACGATAATCCGGGGTACTTGGCCCGACCCTTGACGGTGGTGCGGACCAAGACTAGCACTGGTGGTGCTCGGCTTTTGGCGCCGATTAAACAAGAGGTATTTGATGATTCTTTCATTCCAAAGGAAAATGTTAAACAAGAGGTATTCGATGATTCTTACTTTTCAAAGGAAAATATCAAAGGGGAAGTGTTTGAGAAGTCGATTTCTGTTAAAGAAGAACCAGGTACAAGTGTTTCTCAGCCATTTACCAATACTAATATGTCATTTGACGAGTTCCTTAGAGCTACCAATACAAAAGTTATGTCTCAGGATGAATGTCTAAACTCCCTAGGCAAACTAGAGTCATCTACTCAAACTGACGGGGTGGAATTGAAGAACAAGTTGGGTTCTGAGCAACTGGTTGATAAGGTCCCTGTGAAGGAAGATGATAAAGAAACGAAAACAAATGTTTCTCAGCCATTTCCCAATACTAATATGTCATTTGACAAATTCCTTAGAGCTACCAATACAAAAGTTATGTCTCAGGATGAATGTCTAAAATCCCTGGGCAAACTAGAGTCATCTACTCAAACTGAAGGGGTCGAATTGAAGAACAAGTTGGGTTCTGAGCAACTGGTTGATAAGGTCCCTGTGAAGGAAGATGATAAAGAAACGGGTACAAATGTTTCTCAGCCATTTACTAATGACGATTTCCTTAAATCTACCAATACAAAGGTTATGTCTCAGGATGAATATAAAAAATCCCTGGTCGAACTAGAGTCATATACTCAGACGGAGGGGTTGGAGTCGAAGAACAAGTTGGGTTCTGAGCAACTGGTTGATAAGGTATCTGTGAAGGAAGAGGATGGTACCTCTGATTGCATTGAAATAGAGCGGCCCACCCAATCAAGAACGCATAATCATAAATCTTCCCGAGTGAATATGGAAAATAGAGTGATCGTCTATACTGGGGTGGAGGACGGAGACTTTCCGGAAGATCCAGACTGGCTTTTCGTGGGAGGGTCAGTCGTAGTTGCACTTTCAACTACCAAAGGCCGGAAGTTGGTGGACAATGAGATAGTTGATTTCAATTTCCCTCCTCCAAGTCCAAAATTCAAGTCCAACTCCCAATATATTGTTCGCATTGGAACCAAACGTTCTGGAGAGGTTGGACGGCTTCCGATGGAATGGGCCAAATTTGTCACTCCACTTGTGCAATCTTCAAAGGTTAAAGTTCGAGGGCGATGCATAGCCGCACCTACGATTTTACAAATGATGCAAGAAATCATGTTGTATGCAAGCTTTTACATTCACCGCTCCATATTCACACAGTGTGGTGAGAAGTCTTCTTGGAGACTAGATGCTTCTACTAACATTGACTCCACTATTTACCCTCTCCTCAAATTGTTCAGTTGGCTTGAAATAAATCCATATCAAAAGGCTGAATTTACCCCGGAGGAACTTGATTCTAGGAAGCGTAAGTTTAATTTGGAGGGTGATTCAGATGAAGGTGCATTAGTGTTGTATAATATGAAACGGGCAAAGGGTTGCCAACAGTCAGCAGAGCCAAACAAGGATGAACAAGCTGTTTCAGAGTCATATTTAAATAAGCTTGTCGGAGCTGCTGAAGTCTATGAATTGGAGGAAATGGAACCCCCAAGCACACTTATGTGTGACTTAAAGCCTTACCAGAAACAAGCTCTCCATTGGATGTCAGAAATAGAGAAGGGAAATGGTGTTGAGGAAGATACAAAAACTCTTCATCCTTGCTGGGCAGCCTATCGTATATGTGATGGAAGGGCTTCCTCAATTTACGTTAACAACTTCACAGGGGAAGCAACAACAAAGTTACCAACTGCAGCACAAATGTCAAGAGGAGGAATTCTAGCAGATGCAATGGGACTTGGAAAGACTGTGATGACTATTGCTCTAATTCTTGCAAGATCTGGCAAGGGGAGTTCAGAAAACAAAGATGAAGAGAATTTAGATAATTCTAGTTTTACAACAAAGAGGAGGAAAGATTCTTATAGCAGCACTTCCTTTAGAGCAAAGGGTGGCACTCTAATTGTTTGTCCCATGGCATTGCTAGGTCAATGGAAGGATGAGCTTGTGACCCATTCAGAGCCAGAAAGTATATCCATTTTCGTTCACTATGGTGGGGACAGAAGCAATGACCCTGAGGTGCTCTCAGAGTATGATGTTGTCTTAACAACGTATGGTCTCCTAACAGCTGCATATAGAAGTGACGGAGAGGATAGCATATACCACAGGGTTGATTGGTACAGGCTGGTGCTAGATGAAGCTCATACTATTAAAGCCTCTAAAACCCAGGCTGCCCAGTCTGCTTTTACTTTGTCATCACTTTGTCGTTGGTGTCTAACTGGAACCCCTCTTCAGAATAAATTGGAAGACCTATTCAGCCTCCTTTGCTTCTTGCGTGTTGAACCATGGTGCAACTGGGCATGGTGGAATAAATTGATTCAAAAGCCTTATGACAATGGTGATCCAAGAAGCCTAAAATTGGTCAAGGCCATTTTGAGGCCACTGATGTTAAGAAGAACGAAGGAATCAAAGGATAAGGAAGGAAGGCCCATACTTGTTCTTCCACCAGCTGACATTCAAGTAATTGAGTGTGAGCAGTCAGAAGCTGAATATGACTTTTATAGTGCCCTCTTCAAGAGATCTAAAGTTCAATTTGATCAGTATGTCGCACAAGGCAAGGTTCTTCACAACTATGCTAACATCCTCGAGCTACTATTACGGTTGAGGCAGTGTTGTAACCATCCATTTTTGGTCATGAGTCGAGGTGATTCACAGAAATATGCAGACTTGAACAAATTCGCAAAAAGATTTTTCGAGTCCAATTCAGGTTCTGCTTCTACAAATCAGGCTATCCCATCTCGTGCATACGTTGAAGAGGTTGTGGAGGGAATCAGGAAAGGCGAAAATGTAGAATGCCCCATATGCATGGAGTCAGCAGATGATCCTGTATTCACACCATGTGCACATAGGATGTGTAGGGACTGCCTACTTTCCAGCTGGAGGACCCCGGTGGGAGGTCCATGCCCACTCTGTCGCCAAATGCTCAAGAAAACTGATCTTATTACTTGTCCATCAGAAAGTCGGTTCAGGGTTGATGTCGAGAAGAACTGGAAGGAATCTTCAAAGGTTTCAAAGCTTTTGGAGTGCTTGAAAGGCATTGAGAAGTCAGGCTCTGGTGAGAAAAGCATTGTCTTTAGCCAATGGACTTCATTTTTTGACCTCCTGGAGATTCCATTGAAGAGGAAACGAATTGGGTATCTAAGATTTGATGGGAAATTGGCTCAAAAGCAGAGAGAGGCAGTTTTAAAGGAATTTAGCGAGTCAAGCGAGAAAAGGATTTTGTTGATGTCACTAAAAGCTGGTGGCGTGGGTCTGAACTTAACTGCAGCCTCAAATGTATTTTTAATGGATCCATGGTGGAATCCTGCGGTTGAGGAACAAGCAATAATGAGAATTCATCGTATAGGACAAAAGAGGACTGTTGTTGTTAGAAGATTCATTGTCAAGGACACAGTGGAAGAGCGGATGCAACAAGTGCAGGCCAAGAAGCAAAGGATGATATCCGGAGCCCTGACTGATGAAGAGGTCAGATCTGCCAGGCTTGAAGAGCTCAAAATGCTCTTCCGATGA 3789 0.4328 MEPKPVGEEDAAQNVRSRIGFEVPVAVVLRALSESGFDPDAAVKFLNDNPGYLARPLTVVRTKTSTGGARLLAPIKQEVFDDSFIPKENVKQEVFDDSYFSKENIKGEVFEKSISVKEEPGTSVSQPFTNTNMSFDEFLRATNTKVMSQDECLNSLGKLESSTQTDGVELKNKLGSEQLVDKVPVKEDDKETKTNVSQPFPNTNMSFDKFLRATNTKVMSQDECLKSLGKLESSTQTEGVELKNKLGSEQLVDKVPVKEDDKETGTNVSQPFTNDDFLKSTNTKVMSQDEYKKSLVELESYTQTEGLESKNKLGSEQLVDKVSVKEEDGTSDCIEIERPTQSRTHNHKSSRVNMENRVIVYTGVEDGDFPEDPDWLFVGGSVVVALSTTKGRKLVDNEIVDFNFPPPSPKFKSNSQYIVRIGTKRSGEVGRLPMEWAKFVTPLVQSSKVKVRGRCIAAPTILQMMQEIMLYASFYIHRSIFTQCGEKSSWRLDASTNIDSTIYPLLKLFSWLEINPYQKAEFTPEELDSRKRKFNLEGDSDEGALVLYNMKRAKGCQQSAEPNKDEQAVSESYLNKLVGAAEVYELEEMEPPSTLMCDLKPYQKQALHWMSEIEKGNGVEEDTKTLHPCWAAYRICDGRASSIYVNNFTGEATTKLPTAAQMSRGGILADAMGLGKTVMTIALILARSGKGSSENKDEENLDNSSFTTKRRKDSYSSTSFRAKGGTLIVCPMALLGQWKDELVTHSEPESISIFVHYGGDRSNDPEVLSEYDVVLTTYGLLTAAYRSDGEDSIYHRVDWYRLVLDEAHTIKASKTQAAQSAFTLSSLCRWCLTGTPLQNKLEDLFSLLCFLRVEPWCNWAWWNKLIQKPYDNGDPRSLKLVKAILRPLMLRRTKESKDKEGRPILVLPPADIQVIECEQSEAEYDFYSALFKRSKVQFDQYVAQGKVLHNYANILELLLRLRQCCNHPFLVMSRGDSQKYADLNKFAKRFFESNSGSASTNQAIPSRAYVEEVVEGIRKGENVECPICMESADDPVFTPCAHRMCRDCLLSSWRTPVGGPCPLCRQMLKKTDLITCPSESRFRVDVEKNWKESSKVSKLLECLKGIEKSGSGEKSIVFSQWTSFFDLLEIPLKRKRIGYLRFDGKLAQKQREAVLKEFSESSEKRILLMSLKAGGVGLNLTAASNVFLMDPWWNPAVEEQAIMRIHRIGQKRTVVVRRFIVKDTVEERMQQVQAKKQRMISGALTDEEVRSARLEELKMLFR 1262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g0787 1262 CDD SF2_C_SNF 1093 1220 - -
Bisa08g0787 1262 Pfam Zinc finger, C3HC4 type (RING finger) 1022 1070 - -
Bisa08g0787 1262 Pfam HIRAN domain 383 470 IPR014905 GO:0003676|GO:0008270|GO:0016818
Bisa08g0787 1262 Pfam Helicase conserved C-terminal domain 1095 1209 IPR001650 -
Bisa08g0787 1262 SMART HIRAN_2 376 476 IPR014905 GO:0003676|GO:0008270|GO:0016818
Bisa08g0787 1262 SUPERFAMILY RING/U-box 1013 1070 - -
Bisa08g0787 1262 SMART ring_2 1025 1064 IPR001841 -
Bisa08g0787 1262 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 657 854 IPR014001 -
Bisa08g0787 1262 SMART helicmild6 1126 1209 IPR001650 -
Bisa08g0787 1262 ProSitePatterns Zinc finger RING-type signature. 1040 1049 IPR017907 -
Bisa08g0787 1262 SMART ultradead3 595 873 IPR014001 -
Bisa08g0787 1262 CDD DEXDc_SHPRH-like 599 892 - -
Bisa08g0787 1262 CDD RING-HC 1024 1064 - -
Bisa08g0787 1262 Gene3D - 650 893 IPR038718 -
Bisa08g0787 1262 Gene3D - 908 1262 IPR027417 -
Bisa08g0787 1262 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 905 1254 IPR027417 -
Bisa08g0787 1262 Pfam SNF2-related domain 602 970 IPR000330 GO:0005524|GO:0140658
Bisa08g0787 1262 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 369 1262 - -
Bisa08g0787 1262 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 584 892 IPR027417 -
Bisa08g0787 1262 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1098 1262 IPR001650 -
Bisa08g0787 1262 FunFam DNA repair protein RAD5B 654 893 - -
Bisa08g0787 1262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 988 1089 IPR013083 -
Bisa08g0787 1262 ProSiteProfiles Zinc finger RING-type profile. 1025 1065 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g0787 Bisa-ChrBisa08 13960139 13966870 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g0787 364 1262 RAD5 or RAD16-like Gene Family AT5G43530 71.746 0.0 1376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bisa08g0787 SNF2_N 7.6e-79 CL0023