Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g0769 ATGCTTGATTATGTTCTCCTGGTGCTATTTCTTCCCTGCCTCGGCATGAGCGCCGTCTTCATGGTCTACATGTGTTTTCTCTGGTACGCCACCATGCGCCGCCCCATTGTGTCTATGTTGGTAAAGCTCGTCGCCGAGAAAGGCCTATTAGCATTTGAATTGGAGAAGTTGTCAAAGATTATTGGCAAGGAACTTGTGTTGGGGAGAAAATGTGCAGTATGCCTCGATGAGATCGAGAGCGAGCAGCCGGCTCTGCTGGTTCCTTGCTACAACCATGACTTCCATATGGAATGCGTCAATGCTTGGCTCTCCAAGCACCCATGTTGTCTAAATTATGTGTGGAGTGTTTTGGCTTGGACTGAAAGTAGCAAAGAAAACGGAGAGGGATCTGGCAAAGGTGAAGAGAGGAGGAGGGGAAGGAGGAAGATGGAAAGAGAGGCCCATACTCTCTGCCTTTTGCCCATCCATCACAACCTCAATCCAACAATAATGTCCTCCAAGTACTTGCTGGTGTTCCTCCTTGGAGTGGTGTTTATCACCACTCATGGCTTGGCTGATTACAAGCCACCCACTTACAAACCTCCTGTTGAAAAGCCACCTGTTTACAAGCCTCCAGTTAAGAAGCCACCGGTTTACAAACCACCTGTTGAGAAGCCACCTTCTTATAAGCCTCCAGTTAAAAAGCCACCAATTTACAAGCCGCCAGTTGAGAAACCTCCCACTTACAAGCCACCTGTAGAGAAACCTCCTGTCTACAAGCCACCAGTTAAAAAGCCTCCTACTTACAAGCCTCCAGTTGAGAAGCCAGAGACTTACAAGCCTCCCACTGAGAAGCCACCCGTGTACAAGCCACCAACTGAGAAGCCTCCCACTTACAAACCACCAGTTGAGAAGCCACCAACTTACAAGCCTCCAGTTGAGAAGCCTCCCACTTACAAGCCTCCAATTGAGAAACCACCCGTGTACAAGCCTCCTACTTATAAACCTCCAGTTAAGAAGCCGCCGGTTTACAAACCGCCAGTAGAGAAGACGCCCAGCTACCAATCACCACCTTATGGTCACTATCCCAAGCACCCTCCATCAACCACGAACTAA 1095 0.4895 MLDYVLLVLFLPCLGMSAVFMVYMCFLWYATMRRPIVSMLVKLVAEKGLLAFELEKLSKIIGKELVLGRKCAVCLDEIESEQPALLVPCYNHDFHMECVNAWLSKHPCCLNYVWSVLAWTESSKENGEGSGKGEERRRGRRKMEREAHTLCLLPIHHNLNPTIMSSKYLLVFLLGVVFITTHGLADYKPPTYKPPVEKPPVYKPPVKKPPVYKPPVEKPPSYKPPVKKPPIYKPPVEKPPTYKPPVEKPPVYKPPVKKPPTYKPPVEKPETYKPPTEKPPVYKPPTEKPPTYKPPVEKPPTYKPPVEKPPTYKPPIEKPPVYKPPTYKPPVKKPPVYKPPVEKTPSYQSPPYGHYPKHPPSTTN 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g0769 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 111 IPR013083 -
Bisa08g0769 364 SUPERFAMILY RING/U-box 70 109 - -
Bisa08g0769 364 Pfam Ring finger domain 70 109 IPR001841 -
Bisa08g0769 364 PRINTS Proline rich extensin signature 213 229 - -
Bisa08g0769 364 PRINTS Proline rich extensin signature 188 209 - -
Bisa08g0769 364 PRINTS Proline rich extensin signature 254 279 - -
Bisa08g0769 364 PRINTS Proline rich extensin signature 232 249 - -
Bisa08g0769 364 PANTHER PROLINE-RICH EXTENSIN-LIKE PROTEIN EPR1 164 310 - -
Bisa08g0769 364 MobiDBLite consensus disorder prediction 196 364 - -
Bisa08g0769 364 Pfam Extensin-like protein repeat 309 318 IPR003883 GO:0005199
Bisa08g0769 364 Pfam Extensin-like protein repeat 299 308 IPR003883 GO:0005199
Bisa08g0769 364 Pfam Extensin-like protein repeat 219 228 IPR003883 GO:0005199
Bisa08g0769 364 Pfam Extensin-like protein repeat 324 333 IPR003883 GO:0005199
Bisa08g0769 364 Pfam Extensin-like protein repeat 259 268 IPR003883 GO:0005199
Bisa08g0769 364 Pfam Extensin-like protein repeat 189 198 IPR003883 GO:0005199
Bisa08g0769 364 Pfam Extensin-like protein repeat 239 248 IPR003883 GO:0005199
Bisa08g0769 364 Pfam Extensin-like protein repeat 334 343 IPR003883 GO:0005199
Bisa08g0769 364 Pfam Extensin-like protein repeat 289 298 IPR003883 GO:0005199
Bisa08g0769 364 Pfam Extensin-like protein repeat 199 208 IPR003883 GO:0005199
Bisa08g0769 364 Pfam Extensin-like protein repeat 229 238 IPR003883 GO:0005199
Bisa08g0769 364 Pfam Extensin-like protein repeat 209 218 IPR003883 GO:0005199
Bisa08g0769 364 Pfam Extensin-like protein repeat 279 288 IPR003883 GO:0005199
Bisa08g0769 364 Pfam Extensin-like protein repeat 249 258 IPR003883 GO:0005199
Bisa08g0769 364 Pfam Extensin-like protein repeat 319 328 IPR003883 GO:0005199
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g0769 Bisa-ChrBisa08 13377575 13379722 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g0769 1 109 C3H Transcription Factor Family AT5G42200 47.009 1.21e-25 99.8