Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bisa08g0738 | ATGATTCATCTGCAAATTTTCCGATCGCTTCTTCGCTCAATCCTATCTTCCTCAGAAAACCGATACCTCTATGAAGACCGGAGCGCGGAAGTCGCTGCCGCACCACCTTATGCAGTTTTTGTCGCTCGAGCTTTGTCTCCGGCGGTTTCCTTGCGTTTTTTCTCAGATGGAATGGCAGATCCTGCTAGTTCTGGTGAAAATCTTGAGCAAGATGAAACAACATTGATTTGGATGTCAAAGAAAGGAGAAAGGAATCTGAAATTGTCTTCCGTTTCTGGTATTATACCTGGACAGAGAACTGCTGTCTTTAAAAGATATTTGTGCCCTGAAAAGGATAATTTGTCATTTTCTCTTCTTTATAGAAACGGTGAACGATCACTTGATCTGATCTGCAAGGATAAAGCTGAGGCAGAAGTATGGTTTGCAGGCCTTAAGGCATTAATATCTACTGGACAGCGTCATAGAGATAGACATATCAGAAGTGACATATCCGACCTACTCGGTGACTTTACTCAAAATGGCATTCCTATTGACCATGGTAGGGTCTCCTTTGATTCAATTTCTCATGAATCTCCACTGAATTGGGCAAGTTTAGATGTGGGATCAGAACGTGGAAATATGCAACTAAGGGCAAGTGGAGATAACTTCCGTTTTAGTGTGTCAAGCAGTCATAGCTGTACAAGTACAGGATCTGGACCTGATGACATTGAGTCACTTGGCGATGTTTATATATGGGGAGAGATTTGGGCAGATCGGATTTCATCTGATGGATTGGGGAGTCAGGTCTCTTCGAAGACAGATGTGCTGACTCCCAAGCCATTAGAGTCAAATGTTGTTCTCGATGTTCATCAGATTGCATCTGGTGTGCGCCACATTGCTCTAGTTACAAGGCAGGGAGAGCTTTTTACTTGGGGAGAGGAATCTGGGGGAAGACTTGGTCATGGGATCAATAAAGATTTTAGTTGCCCTCGTCTTGTTGAGTTCCTGGCAGCTACTAATGTGGAATTTGTTGCATGCGGAGAGTATCATACGTGTGCTGTATCTACGTCTGGAGATCTATTCTCCTGGGGTGATGGTACCCACCGTGCTGGACTTCTTGGTCATGGAACTGATGTTAGCCACTGGATACCAAAGAGGATCACTGGTCCTTTAGAAGGACTTCAAGTTTTATCGGTGGCATGTGGTACATGGCATTCAGCAGTGGCAACCTCCAATGGAAAACTGTTCACCTTTGGTGATGGAACATTTGGTGTCTTGGGCCATGGAGATCAAGAGAGTGTGTCATATCCAAAGGAGGTACGATCATTGAGCGGACTAAAGACTATTAAGGTTGCATGTGGAGTATGGCACACTGCAGCTATTGTTGAGGTTATGGGCCAGGCAGGTTCGAATGTTTTATCTGGGAAGCTCTTCACCTGGGGTGATGGAGACAAATATCGTTTAGGTCATGGTAACAAGGAAACATATCTTCAACCCACATGTGTCTCTGCACTTATTGAATTTAATTTCCTCCTGATAGCATGTGGGCATACTTTCACAGTTGCCCTCACTACATCAGGTCATGTCTTCACTATGGGAGGCACTGCACATGGTCAACTAGGAAATCCTCTCTCTGATGGAAAAGCACCTTTCATTGTTCAAGATAAGTTGGGTGGTGAATTTGTTGAGGAAATAGCATGTGGAAAACATCATGTTGCTGCACTGACATCAAGAAGTGAACTATATACTTGGGGGAAAGGTGCCAATGGAAGATTGGGACATGGAGACATGGAAGACCGTAAATCACCGACATTGGTGGAAGGCTTGAAAGATAAGCACATCAAAAATATTTCATGTGGCTCAAACTTCACATCTTGTATTTGCATCCACAAATGGGTCTCTGGAGCTGACCAATCTGTTTGCGCTGGTTGCCGGCAAACATTTGGTTTTACTAGAAAGAGGCACAATTGTTATCATTGTGGATTGGTGCATTGTCATTCTTGTAGTTCCAAAAAGGCATTGAGAGCAGCGTTAGCTCCAACGCCAGGAAAACCACATCGTGTGTGCGATGCTTGTTATGCAAAGCTTAAAACTTCTGAAGCAGGTCCTGCTTTCACTTTAAGTAGAAGAGCTACCCCTCTTCGTCGATCCTTAGATAGTAGGGACAGAATAGAATGGGTAGAGACAAGGTCTTCAAGAGTTCTCTTATCTCCCATCACAGAACCTGTAAAATACCTTGAGATAAAGACTAAGAAGCCTGGAACTAAGTATGATTCCTCTTCCATTGTCCGAGCTTCTCAAGTTCCATCACTTCTACAATTGAAAGATATTGCTTTTCCAAGTTCATTAAGCGCCATTCAGAATGCTTTCAAGCCAGTTATACCTCCAACTCCACCACGTACACCACCTTCCAATTCAAGGTCTTCATCACCATATGCAAGAAGACCTAGCCCACCACGTTCACCCAATCCAGGATTCTCTAGAAGTATCATAGACAGTTTGAAGAAGACAAATGAGATTTTGAACCAAGAAGTTTCAAAATTGCATAAACAAATTCAAAGTTTGAAGCAGAGGAGTGATAGGCAAGATGGGGTGATACAGAAGCTTCAGAAACATGTTGGGGGAGTCACATCATTGGCTGAAGAGAATTCTTCCAAGCGTCAAGCAGCAGTGGAATTTATTAAGTCCATGACAAATCAGTTGAAGGAAATAACTGACAACTTGCCACAAGAGGTTTCTGACAGTGAAATCTTAAAATCCCTGCAAGCTCAAGCTGAAGATTTTCTAAGAGAAAATACACAATCTGAAACTTCTTCCTCCTTATCATCAAACTTGAAGTCTGACCAACTAAATGCAACTCATATACCTGCTTCAGATGGTGACTCTTCTAAACCGGAAGAACACAAACTGGAAGATAATGTAGATGCTGCTGACCCATCTCAAGATGGAGGAAATGTGCGTCAAGGAAGTAATGGATCATCTTTATCTGTCACAGGAGCAGCATTACCTCCACAAAGCTCAGAATATGGTTCAGGATCGTCAAACTCTTCAAGACCTAGGAGAGAAGGAGAAACCATTGAACAATTTGCACCTGGTGTTTACGTGACACTCATAGTACGGGGCAATGGTATTAAAATTTTCGAACGAGTTAAATTCAGTAAGCGAAGGTTCGATGAACAACAAGCAGGAGAATGGTGGAACAAAAACAAAGAAAAGGTGCTCAGGAAATATAGTCTACCGACGACAAATTCTGCAGCTACTTGCGCACCTAGCACCCCACCACCACCTGCTGAAGAGAATGCTTCCTAA | 3288 | 0.431 | MIHLQIFRSLLRSILSSSENRYLYEDRSAEVAAAPPYAVFVARALSPAVSLRFFSDGMADPASSGENLEQDETTLIWMSKKGERNLKLSSVSGIIPGQRTAVFKRYLCPEKDNLSFSLLYRNGERSLDLICKDKAEAEVWFAGLKALISTGQRHRDRHIRSDISDLLGDFTQNGIPIDHGRVSFDSISHESPLNWASLDVGSERGNMQLRASGDNFRFSVSSSHSCTSTGSGPDDIESLGDVYIWGEIWADRISSDGLGSQVSSKTDVLTPKPLESNVVLDVHQIASGVRHIALVTRQGELFTWGEESGGRLGHGINKDFSCPRLVEFLAATNVEFVACGEYHTCAVSTSGDLFSWGDGTHRAGLLGHGTDVSHWIPKRITGPLEGLQVLSVACGTWHSAVATSNGKLFTFGDGTFGVLGHGDQESVSYPKEVRSLSGLKTIKVACGVWHTAAIVEVMGQAGSNVLSGKLFTWGDGDKYRLGHGNKETYLQPTCVSALIEFNFLLIACGHTFTVALTTSGHVFTMGGTAHGQLGNPLSDGKAPFIVQDKLGGEFVEEIACGKHHVAALTSRSELYTWGKGANGRLGHGDMEDRKSPTLVEGLKDKHIKNISCGSNFTSCICIHKWVSGADQSVCAGCRQTFGFTRKRHNCYHCGLVHCHSCSSKKALRAALAPTPGKPHRVCDACYAKLKTSEAGPAFTLSRRATPLRRSLDSRDRIEWVETRSSRVLLSPITEPVKYLEIKTKKPGTKYDSSSIVRASQVPSLLQLKDIAFPSSLSAIQNAFKPVIPPTPPRTPPSNSRSSSPYARRPSPPRSPNPGFSRSIIDSLKKTNEILNQEVSKLHKQIQSLKQRSDRQDGVIQKLQKHVGGVTSLAEENSSKRQAAVEFIKSMTNQLKEITDNLPQEVSDSEILKSLQAQAEDFLRENTQSETSSSLSSNLKSDQLNATHIPASDGDSSKPEEHKLEDNVDAADPSQDGGNVRQGSNGSSLSVTGAALPPQSSEYGSGSSNSSRPRREGETIEQFAPGVYVTLIVRGNGIKIFERVKFSKRRFDEQQAGEWWNKNKEKVLRKYSLPTTNSAATCAPSTPPPPAEENAS | 1095 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bisa08g0738 | 1095 | PRINTS | Chromosome condensation regulator RCC1 signature | 567 | 588 | IPR000408 | - | |
| Bisa08g0738 | 1095 | PRINTS | Chromosome condensation regulator RCC1 signature | 301 | 317 | IPR000408 | - | |
| Bisa08g0738 | 1095 | PRINTS | Chromosome condensation regulator RCC1 signature | 408 | 422 | IPR000408 | - | |
| Bisa08g0738 | 1095 | PRINTS | Chromosome condensation regulator RCC1 signature | 351 | 367 | IPR000408 | - | |
| Bisa08g0738 | 1095 | PRINTS | Chromosome condensation regulator RCC1 signature | 509 | 527 | IPR000408 | - | |
| Bisa08g0738 | 1095 | PRINTS | Chromosome condensation regulator RCC1 signature | 392 | 408 | IPR000408 | - | |
| Bisa08g0738 | 1095 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 628 | 690 | IPR017455 | - | |
| Bisa08g0738 | 1095 | Coils | Coil | 824 | 851 | - | - | |
| Bisa08g0738 | 1095 | Gene3D | - | 466 | 637 | IPR009091 | - | |
| Bisa08g0738 | 1095 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 82 | 893 | - | - | |
| Bisa08g0738 | 1095 | Pfam | FYVE zinc finger | 624 | 690 | IPR000306 | GO:0046872 | |
| Bisa08g0738 | 1095 | MobiDBLite | consensus disorder prediction | 783 | 822 | - | - | |
| Bisa08g0738 | 1095 | MobiDBLite | consensus disorder prediction | 953 | 969 | - | - | |
| Bisa08g0738 | 1095 | MobiDBLite | consensus disorder prediction | 922 | 951 | - | - | |
| Bisa08g0738 | 1095 | SUPERFAMILY | PH domain-like | 68 | 148 | - | - | |
| Bisa08g0738 | 1095 | Gene3D | - | 201 | 465 | IPR009091 | - | |
| Bisa08g0738 | 1095 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 240 | 298 | IPR000408 | - | |
| Bisa08g0738 | 1095 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 638 | 695 | IPR013083 | - | |
| Bisa08g0738 | 1095 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 444 | 454 | IPR000408 | - | |
| Bisa08g0738 | 1095 | SUPERFAMILY | FYVE/PHD zinc finger | 624 | 691 | IPR011011 | - | |
| Bisa08g0738 | 1095 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 299 | 347 | IPR000408 | - | |
| Bisa08g0738 | 1095 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 467 | 516 | IPR000408 | - | |
| Bisa08g0738 | 1095 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 350 | 401 | IPR000408 | - | |
| Bisa08g0738 | 1095 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 573 | 620 | IPR000408 | - | |
| Bisa08g0738 | 1095 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 405 | 454 | IPR000408 | - | |
| Bisa08g0738 | 1095 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 519 | 568 | IPR000408 | - | |
| Bisa08g0738 | 1095 | Pfam | Transcription factor BRX N-terminal domain | 875 | 909 | IPR027988 | - | |
| Bisa08g0738 | 1095 | MobiDBLite | consensus disorder prediction | 922 | 1018 | - | - | |
| Bisa08g0738 | 1095 | MobiDBLite | consensus disorder prediction | 976 | 1012 | - | - | |
| Bisa08g0738 | 1095 | SMART | fyve_4 | 622 | 691 | IPR000306 | GO:0046872 | |
| Bisa08g0738 | 1095 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 211 | 459 | - | - | |
| Bisa08g0738 | 1095 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 406 | 457 | IPR000408 | - | |
| Bisa08g0738 | 1095 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 351 | 405 | IPR000408 | - | |
| Bisa08g0738 | 1095 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 299 | 350 | IPR000408 | - | |
| Bisa08g0738 | 1095 | CDD | FYVE_like_SF | 634 | 686 | - | - | |
| Bisa08g0738 | 1095 | Gene3D | - | 66 | 157 | IPR011993 | - | |
| Bisa08g0738 | 1095 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 285 | 295 | IPR000408 | - | |
| Bisa08g0738 | 1095 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 468 | 519 | IPR000408 | - | |
| Bisa08g0738 | 1095 | Coils | Coil | 911 | 931 | - | - | |
| Bisa08g0738 | 1095 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 572 | 623 | IPR000408 | - | |
| Bisa08g0738 | 1095 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 520 | 571 | IPR000408 | - | |
| Bisa08g0738 | 1095 | ProSiteProfiles | BRX domain profile. | 1016 | 1071 | IPR013591 | - | |
| Bisa08g0738 | 1095 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 1016 | 1070 | IPR013591 | - | |
| Bisa08g0738 | 1095 | MobiDBLite | consensus disorder prediction | 1074 | 1095 | - | - | |
| Bisa08g0738 | 1095 | SUPERFAMILY | RCC1/BLIP-II | 239 | 625 | IPR009091 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bisa08g0738 | Bisa-ChrBisa08 | 12672223 | 12679299 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bisa08g0738 | 1017 | 1084 | Major Intrinsic Protein MIP | AT1G31880 | 32.353 | 8.64e-07 | 50.4 |