LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa08g0733	ATGGATCAAATTATTGGGGGAAAATTCAAGCTCGGGCGGAAGATTGGGAGTGGATCGTTTGGCGAACTTTATTTGGGCGTTAATGTACAAACTGGTGAGGAAGTGGGTGTCAAGCTGGAACCTGTGAAGACCAAACATCCTCAGCTTCATTATGAGTCCAAATTATATATGCTTCTTCAGGGAGGAACTGGTATTCCCCATTTGAAATGGTTTGGAGTTGAGGGTGATTACAATGTCATGGCTATTGACCTTCTTGGACCAAGTCTAGAAGATTTGTTTAACTATTGCAATAGAAAATTCTCTCTGAAAACAGTTCTGATGCTAGCAGATCAGCTGATAAACAGAGTTGAATACATGCACTCACGAGGTTTTCTTCACCGTGATATAAAGCCTGATAACTTTTTAATGGGTTTGGGCCGTAAAGCAAACCAGGTGTACATAATTGATTATGGCCTGGCAAAAAAGTATCGGGATCTCCAAACACATAAGCACATACCGTACAGGGAAAACAAGAATCTCACTGGAACTGCTCGATATGCTAGTGTCAACACTCACCTTGGAGTTGAACAAAGCAGAAGAGATGATCTGGAATCACTTGGTTATGTGCTCATGTACTTCTTGAGGGGAAGTCTCCCTTGGCAAGGCCTGAAAGCTGGCACTAAAAAGCAGAAATATGACAAGATCAGTGAAAAGAAGATGCTTACTCCTATTGAGGTTCTATGCAAGTCATATCCTTCAGAATTCACATCATACTTCCATTACTGCCGATCATTGCGATTTGAAGACAAGCCTGATTATGCATACCTAAAGAGACTATTTAGGGACCTATTTATTAGAGAAGGTTATCAGTTTGATTATGTGTTTGATTGGACCATATTAAAGTATCCACAAATTGGATCAAGCTCCAGAACACGGCAGCCAAGTGGTAAACCAGTCGCAGACCCAGGACCTTCTGCTGAGAGAATAGAACGGCCTTCAGTTGGACAAGAGACTCGGGAAAGATTCCCAGGATCAGTCGAGGCTTTTGCTAGAAGAAATGGCTCTGTTTTGCATAGTGATCTCTCTAGGCACAGGTCCTCAGATGGTGTGCCATCTTCCAAAGTAGTGCATCCTGATTCTGAGAGGGCCCATAGTTCTTCTCGCCCTGGTAGTGCTTCAAAAAGGCCTGTCGTATCAAGCAGCCGGCCAAGCTCCTCTGGTGAACCCAGTGAGAACCGCTCTAGCCGATTGGTCTCAAGCAGTGGTCGTCTATCTACAACTCAAAGGGTTCAACCTGGTTTTGAGTCCAAGTCATCATCATTTACCCGTGCTGCAGCATCAAAAGGTGGTCGTGACGAAACACTAAGGAGCTTTGAGCTTCTGTCGATTGGCACGGGGAAAAGGAAATGA	1389	0.4399	MDQIIGGKFKLGRKIGSGSFGELYLGVNVQTGEEVGVKLEPVKTKHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNVMAIDLLGPSLEDLFNYCNRKFSLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMLTPIEVLCKSYPSEFTSYFHYCRSLRFEDKPDYAYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGSSSRTRQPSGKPVADPGPSAERIERPSVGQETRERFPGSVEAFARRNGSVLHSDLSRHRSSDGVPSSKVVHPDSERAHSSSRPGSASKRPVVSSSRPSSSGEPSENRSSRLVSSSGRLSTTQRVQPGFESKSSSFTRAAASKGGRDETLRSFELLSIGTGKRK	462

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa08g0733	462	MobiDBLite	consensus disorder prediction	378	438	-	-
	Bisa08g0733	462	PANTHER	CASEIN KINASE-RELATED	13	381	-	-
	Bisa08g0733	462	SMART	serkin_6	9	287	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa08g0733	462	FunFam	Putative Casein kinase I	1	85	-	-
	Bisa08g0733	462	Pfam	Protein kinase domain	10	228	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa08g0733	462	CDD	STKc_CK1_delta_epsilon	8	282	-	-
	Bisa08g0733	462	SUPERFAMILY	Protein kinase-like (PK-like)	4	290	IPR011009	-
	Bisa08g0733	462	FunFam	Casein kinase 1-like protein	1	330	-	-
	Bisa08g0733	462	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	124	136	IPR008271	GO:0004672\|GO:0006468
	Bisa08g0733	462	ProSiteProfiles	Protein kinase domain profile.	9	278	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa08g0733	462	MobiDBLite	consensus disorder prediction	300	462	-	-
	Bisa08g0733	462	Gene3D	Transferase(Phosphotransferase) domain 1	1	333	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa08g0733	Bisa-ChrBisa08	12607013	12611703	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa08g0733	8	213	MAP Kinase Kinase Kinase	AT3G06030	25.000	2.14e-13	70.5

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CK1_CK1	Bisa08g0733		Pkinase	9.9e-25	CL0016