Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g0686 ATGGATTCGGATCAAGGGAAGCTTTTTATTGGTGGGATATCTTGGGATACGACGGAGGACAAGCTCAAGGAGCATTTTAGCAATTATGGTGAAGTTTTGCACACCTCCGTTATGAGGGAGAAGAACACTGGGAAGCCAAGAGGTTTTGGATTCGTGGTGTTTGCAGATCCTTCGATTCTCGATAGGGTTTTGGAGGACAAGCATGTAATCGATGGGAGAACGGTAGATGCCAAGAAGGCCTTCTCCAGAGAGGATCAACAAATTTCTGCCACTTCAAGGGCTGGAAATCCTAACTCTTCTAGAAACTCTGGTAATGGTGGAAATATCAGGACCAAAAAAATATTTGTTGGAGGTTTGCCTCCTACCTTGACTGAAGAAAAGTTTCGTCAGTACTTTGAGGCTTATGGTCATGTGACTGATGTAGTAGTCATGTACGACCAGAATACTGGACGACCACGCGGATTTGGGTTTATTTCATTTGACAGTGAAGATGCAGTTGACAGGGTTCTGCATAAGCCATTTCATGATTTAAATGGTAAGCAAGTAGAAGTAAAGCGTGCACTTCCAAAGGATGCCAATCCAGGTGCAAGTGGCCGAACTATGGGTGGTGTAGGAGGTGGTGGTGGTTATCAGGGGTATGGGACATCTGGGGGTAATCAAAATGCATACGATGGTCGGATGGATTCTAGTAGGTATATGCAGCCTCAAAGTACTGGGGCAGCATTTCCACCTTATGGTTCTTCTGGGTATAGTGCTCCTGGGTATGGGTACGGTCCTGCTAATAATGGCATTGGTTATGGTGGATATGGTAGTTATGGTGGTGCAAACGCTGGGTATGGTGGACCTGCTGGTGCAACCTATGGGAATCCAAATGTTCCTAACGCCACTTATGCTGGTGGTCCACCAGGTGCCCCAAGGAGTTCATGGCCTGCTCAAGCTCCCTCGGGTTATGGTTCTATGGGCTATGGGAATACTGCTGCTTGGGGTGCTCCAGGTGGTGGTGCTGGATCTGGTGGTGGTGGCCTTGGTTCAGCACCTGCAGGTCAATCACCTAGTGGGGCTGCTGGTTATGGGAATCAGGGTTATGGTTATGGTGGGTATGGTGGATATGGTGGAAGTGATAGTTCATATGGAAACCCAGGTGTATATGGTGCTGTTGGAGGGCGTTCTGGGAGTTCCCAAAACAGCAATGCTAGTGGAGCAGGAGGGAGTGAATTACAAGGGAATGGTGGCAGCTACAATGGAAGTGGCTATGGTGATGCTAATGGAAGTTCAGGATACGGAAATGTAGCTTGGAGATCTGAACCTGCACAAGCATCTGGAAATTATGGGACTGCTCAGGGAAATGGCCCTCATGGCGGGCAAGTTGGTTATGGTAGTGGGTATGGTGGTGCTCAGTCCAGACAAGCCCAACAGCAGTAA 1422 0.4824 MDSDQGKLFIGGISWDTTEDKLKEHFSNYGEVLHTSVMREKNTGKPRGFGFVVFADPSILDRVLEDKHVIDGRTVDAKKAFSREDQQISATSRAGNPNSSRNSGNGGNIRTKKIFVGGLPPTLTEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFISFDSEDAVDRVLHKPFHDLNGKQVEVKRALPKDANPGASGRTMGGVGGGGGYQGYGTSGGNQNAYDGRMDSSRYMQPQSTGAAFPPYGSSGYSAPGYGYGPANNGIGYGGYGSYGGANAGYGGPAGATYGNPNVPNATYAGGPPGAPRSSWPAQAPSGYGSMGYGNTAAWGAPGGGAGSGGGGLGSAPAGQSPSGAAGYGNQGYGYGGYGGYGGSDSSYGNPGVYGAVGGRSGSSQNSNASGAGGSELQGNGGSYNGSGYGDANGSSGYGNVAWRSEPAQASGNYGTAQGNGPHGGQVGYGSGYGGAQSRQAQQQ 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g0686 473 CDD RRM2_Hrp1p 113 190 - -
Bisa08g0686 473 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Bisa08g0686 473 MobiDBLite consensus disorder prediction 81 112 - -
Bisa08g0686 473 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 180 IPR000504 GO:0003723
Bisa08g0686 473 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Bisa08g0686 473 SUPERFAMILY RNA-binding domain, RBD 3 110 IPR035979 GO:0003676
Bisa08g0686 473 FunFam heterogeneous nuclear ribonucleoprotein 1 107 226 - -
Bisa08g0686 473 Gene3D - 108 229 IPR012677 -
Bisa08g0686 473 SMART rrm1_1 113 185 IPR000504 GO:0003723
Bisa08g0686 473 SMART rrm1_1 7 78 IPR000504 GO:0003723
Bisa08g0686 473 MobiDBLite consensus disorder prediction 388 419 - -
Bisa08g0686 473 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Bisa08g0686 473 MobiDBLite consensus disorder prediction 84 109 - -
Bisa08g0686 473 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Bisa08g0686 473 MobiDBLite consensus disorder prediction 438 473 - -
Bisa08g0686 473 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 473 - -
Bisa08g0686 473 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Bisa08g0686 473 Gene3D - 1 92 IPR012677 -
Bisa08g0686 473 SUPERFAMILY RNA-binding domain, RBD 111 219 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g0686 Bisa-ChrBisa08 11542126 11544456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g0686 8 200 Eukaryotic Initiation Factors Gene Family AT2G23350 23.618 1.34e-07 52.4