LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa08g0647	ATGTATTTGGGAGGCATGGGAGGCAACATGGGATGGGGCATGAATATGATGAACATGGCAGAGGAAGAGGGATGGAGGAAGGGTCCATGGACTGCTGAAGAGGATAGATTGCTGATTGAGTATGTGAGGATTCATGGTGAAGGAAGATGGAACTCTGTTTCTAGACTTGCAGGATTGAAAAGGAATGGGAAGAGTTGCAGATTGAGATGGGTGAATTATTTAAGACCAGACCTGAAGAAGGGTCAGATTACACCACAGGAAGAGAGTGTCATTGTTGAGCTCCATGCTAGGTGGGGAAACAGGTGGTCGACAATTGCAAGGAGCTTACCAGGGAGGACTGACAATGAGATAAAGAACTATTGGAGGACCCATTTCAAGAAAAAGGCCAAAAATCCATCTGATGCTGCTGAAAAAGCGAAAAATCGCCTTTTGAGAAGGCAACAATTTCAGCAGCAACAGCAACAACAATTGCAGCAACAACAACAATTACAACAACAACAACAACAATTCAATTTGGACCTCAAAGGGATTATGGCTCTTTTAGAGGACAATGACCAAAGAGTGGTGCCTTCTTTATCTCAAGTGAGGCAAGAAATGTACCAAAACACCACAGATGAGCAAGGCTACTTCTACTCCATGCTCCATGGCAATTCCTCTGCACCACTTGAATCCTCAAATGATGAAACTTTTTGGGATGGCTTGTGGAATTTGGATGATTTTCATGGCAATTTCAGTGTAGCTAATGCAACAAGCAAAGCCAATCTCCAAAGTTTAGTTGCTCCCTTCTGTTAA	792	0.4318	MYLGGMGGNMGWGMNMMNMAEEEGWRKGPWTAEEDRLLIEYVRIHGEGRWNSVSRLAGLKRNGKSCRLRWVNYLRPDLKKGQITPQEESVIVELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKNPSDAAEKAKNRLLRRQQFQQQQQQQLQQQQQLQQQQQQFNLDLKGIMALLEDNDQRVVPSLSQVRQEMYQNTTDEQGYFYSMLHGNSSAPLESSNDETFWDGLWNLDDFHGNFSVANATSKANLQSLVAPFC	263

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa08g0647	263	Coils	Coil	140	169	-	-
	Bisa08g0647	263	Gene3D	-	84	128	-	-
	Bisa08g0647	263	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	26	74	IPR017930	-
	Bisa08g0647	263	ProSiteProfiles	Myb-like domain profile.	75	125	IPR001005	-
	Bisa08g0647	263	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	75	129	IPR017930	-
	Bisa08g0647	263	ProSiteProfiles	Myb-like domain profile.	22	74	IPR001005	-
	Bisa08g0647	263	SUPERFAMILY	Homeodomain-like	24	121	IPR009057	-
	Bisa08g0647	263	CDD	SANT	84	125	IPR001005	-
	Bisa08g0647	263	SMART	sant	26	76	IPR001005	-
	Bisa08g0647	263	SMART	sant	79	127	IPR001005	-
	Bisa08g0647	263	PANTHER	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	20	204	IPR044676	GO:0003700\|GO:0006355\|GO:0043565
	Bisa08g0647	263	FunFam	Myb transcription factor	27	79	-	-
	Bisa08g0647	263	Gene3D	-	27	79	-	-
	Bisa08g0647	263	FunFam	MYB transcription factor	84	174	-	-
	Bisa08g0647	263	CDD	SANT	29	74	IPR001005	-
	Bisa08g0647	263	Pfam	Myb-like DNA-binding domain	27	74	IPR001005	-
	Bisa08g0647	263	Pfam	Myb-like DNA-binding domain	80	124	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa08g0647	Bisa-ChrBisa08	10853627	10855139	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa08g0647	22	263	MYB Transcription Factor Family	AT3G24310	59.770	6.91e-89	263

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Bisa08g0647		Myb_DNA-binding	3.1e-16	CL0123