Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g0596 ATGGCAGCTTCTGGGAAACATGTCAATGTCTGCTTGCTGGTGCTTGTAACGTTGTCCATTGGAGCCATGGCCAGAGTACAGATCTCTGGGCACAGAAATGTCCAAACACAGGAATTGCAGAGCTTAAGCAACTCGTCAATGGAGGCCAGGGCCAAGCAGGCTGAGGAGTTGAATGAGCGCGCAGTGGCTGACCCAGAGGAGGTTGTTTCCCATGTTGTAACGACCATCCAGAATAGCACAGAAAGGAGAAATTTGGGATTTTTCACATGTGGAACTGGTAACCCCATTGATGATTGCTGGCGCTGTGACTCCGATTGGCACCGTAACAGGAAGCGCCTTGCAGACTGTGGCATTGGGTTCGGTAGGAACGCAATTGGTGGTCGTGATGGTCGCTTCTATGTGGTCACTGACCCCAGAGACGATGACCCTGTGAACCCCAAGCCCGGCACTCTACGCCACGCTGTGATCCAAGACAGGCCTCTCTGGATTGTGTTCAAGCGTGACATGGTGATTCAATTGAAGCAGGAGCTCATCGTGAACAGCTTCAAGACCATTGATGGGCGAGGAGCCAATGTTCACATTGCTAATGGAGGCTGCATCACAATCCAGTATGTCACAAATGTCATAATCCACGGTCTTCACATCCATGACTGCAAACCCACAGGGAATGCCATGGTGAGAAGCACCCCCACACATTATGGTTGGAGGACAATGGCGGACGGTGACGCCATTTCCATATTTGGGTCGAGTCACATTTGGGTCGACCACAATTCTTTGTCCCATTGCGCTGATGGCCTTGTGGACGCTGTTATGGGCTCTACTGCTATTACAATCTCCAACAACCATTTAACCCACCACAATGAGGTCATCCTGCTAGGCCACAGTGATTCTTACACAAGAGACAAGCAAATGCAAGTGACCATCGCATACAACCATTTTGGAGAGGGACTTATTCAGAGAATGCCAAGGTGTAGGCATGGATATTTCCACGTGGTGAACAATGACTACACTCATTGGGAGATGTATGCGATTGGTGGAAGTGCTAACCCCACCATCAATAGTCAGGGGAACAGATACAATGCTCCAGCGAACGCCTTTGCCAAGGAGGTGACAAAGAGAGTGGAAACATCAGCGAGCGAGTGGAAGGGTTGGAACTGGAGGTCAGAGGGAGATCTACTGCTGAATGGCGCTTATTTCACTCCATCTGGTGCTGGGGCTTCAGCCAGCTATGCCAGAGCCTCCAGCTTAGGAGCTAAATCCTCTTCTATGGTTGGTTCAATGACTTCTGGCGCTGGTGCACTCGGTTGCAGAAGAGGCAGTCAGTGCTAG 1329 0.5064 MAASGKHVNVCLLVLVTLSIGAMARVQISGHRNVQTQELQSLSNSSMEARAKQAEELNERAVADPEEVVSHVVTTIQNSTERRNLGFFTCGTGNPIDDCWRCDSDWHRNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDRPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQYVTNVIIHGLHIHDCKPTGNAMVRSTPTHYGWRTMADGDAISIFGSSHIWVDHNSLSHCADGLVDAVMGSTAITISNNHLTHHNEVILLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPANAFAKEVTKRVETSASEWKGWNWRSEGDLLLNGAYFTPSGAGASASYARASSLGAKSSSMVGSMTSGAGALGCRRGSQC 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g0596 442 Gene3D - 93 435 IPR012334 -
Bisa08g0596 442 PRINTS Pollen allergen Amb family signature 342 361 IPR018082 -
Bisa08g0596 442 PRINTS Pollen allergen Amb family signature 384 408 IPR018082 -
Bisa08g0596 442 PRINTS Pollen allergen Amb family signature 116 133 IPR018082 -
Bisa08g0596 442 PRINTS Pollen allergen Amb family signature 176 192 IPR018082 -
Bisa08g0596 442 PRINTS Pollen allergen Amb family signature 413 436 IPR018082 -
Bisa08g0596 442 PRINTS Pollen allergen Amb family signature 140 165 IPR018082 -
Bisa08g0596 442 PRINTS Pollen allergen Amb family signature 240 261 IPR018082 -
Bisa08g0596 442 PRINTS Pollen allergen Amb family signature 320 339 IPR018082 -
Bisa08g0596 442 FunFam Pectate lyase 93 435 - -
Bisa08g0596 442 PANTHER PECTATE LYASE 18-RELATED 57 440 IPR045032 GO:0030570
Bisa08g0596 442 SMART amb_all 168 365 IPR002022 -
Bisa08g0596 442 SUPERFAMILY Pectin lyase-like 74 436 IPR011050 -
Bisa08g0596 442 Pfam Pectate lyase 174 357 IPR002022 -
Bisa08g0596 442 Coils Coil 44 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g0596 Bisa-ChrBisa08 9996358 10000562 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g0596 27 442 Polysaccharide Lyase AT4G13710 79.147 0.0 717