Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g0588 ATGGATGCGGGCTGTGTAACCGACCCGACCTATGAAGAGAATATGGAGGACATGGAAATTGATCAGATTGTGGATGTTCCTGATACTCCTGATAGATTAGCTACTAGGCATGTTGGTCGAAAATATGTTGGTAATCCTGATGTTTATGAGAATGAGAAGAGGGATAGGGGTTTTCCTGTTGTTGAAAATGGTAAGAATGGAAGACAAGCTATTTTTCCTCTGAAGAACTCAAATAGTGATGAAATGAATAACTGCATGGCAGTTTCCCCATCAAAGAAATCTTATACTACACAAATTGCTCCCATATTTAGGAGATCCCGAACTGACAAATTTTTTGGCCATCAGTTGACACTCTCTAATGGATCTGAAAAGATGGAGAAAGGGGAAGATATATGTGCCAAGTTTCCTTCTAGATCATCTTCTCGTGTTTGTGGGGGTGTTGCTGTTTTTGATTTGACTGAAGAAAATGGACAGCCCCAAAAACAGAAACAAGTTTTCTCACATCATGTATTGAAGGATAACACAACTGAAAACAAGAAAGAACTGAAAGCAAGCATTGAGAACTCTCCTATACCTTGCATCCCTGATTCTTCAAATTCGTCTAGCAATGCCTTCGCAGGAAAGTGTAAAATAGATGATAAAACACTTCCCTGCTCTAATATATCTGTGGATCGTGGAAAGAGCATTGATCTATCAAGTGATTCTCAACAAAAAACTGAAAAGCAGACGTCTTTGCCTCCTCGCCTTTTATCTGCTCCAAGATTTAGAGGACAAAAGAGATTGGTACGGAATGGGTGTATCTCACCACATAATATTGCAGCAAGGGTGAAACAATCAGCTGAACAGAATAGTCAGAGAACCAATGATATTGAACAGAGCCATGCTGGGAATGCTGTTTCTAACAATACAGTGTCCCTTTCTGCTATCAATGATATAGTTGCTGATGAGAGAAGCAGTAGCAGAGTGAAAGGAAAAGAATTATTTATTCATCCTTCAAGTGCGCATGATGCTGGAACTATTCACTCAGCTAGCAGCAGCCCTGTGGTCAATTATGAAGAGGCCAATGGCACCACTAGTGCTTTCAGAAATTCACTTGAAAGCTTTGGGGGACCAGGTGGTTGGAGAACTTCACGTAACTGTAGGAATAACAATCAGTCCTTGCATGATATAAATGGGCATCATATGAGGAGAGATAATGATTCTGAAAGCTTTGTTAGCACACACTATAGGAATAGAGTGGACAGAAGAGACATTGGGAGCAGTCAAAGCAGTAGGAATGTACGACATCCTCTAGAAAATCATGCAGATCATGTGACTTTGATCATTTCAGATGCAGAACAATCCACTGGACCTTGTCCTACAGCAGACAAACTGACTAAAAGGCAAAGGAAAAGTGGATCAACTTCTAGAAATCCTAATTCAGAGATTATGATCCTTGATTCACTTGGGGAGTCATCAAATTCAAGCTCATCCAGAAGCTCTGTCGTGGATGCTGAAGTTGTTGAGCTGTCACCTGAAACAACATACACCAACAGAGTGTCTTACGATTTAGATAATGATGACTCAGATGCTCGGGCTAGACAGGTGGAAGCAGATGAGAGATTGGCCCGTGAACTCCAAGAACAATTATATCATGAGGATTCTTTTGATGGCAGAGAGATTGACGAACATCTAGCATGGGAGTTGCAACGTGAAGAGGACCTTCTGCGTACATCTATTGAAAGTCACCATATATCACACCCTAGATCATTGTCAAGGGCACCCTCAAATAGACAGCCTCGTTCACGGTCTCATCAAAGTCCTACAAATAGGAGGAGAGTAGTGCCTCATCTCCCTCTCTCTAATAGAGTCTCACAGTTGAGGAGTCGCATTATAAATCGTTCTTCAACATCTGCCATCCCTACTAGAGGAAGGCGTCTTCGGTTTCCTGTGGATATGGACTTTGACATGAGACTTGATATATTGGAAGCTCTAGAGGATGCAGTTGGGGATATCAGTGATATGGGAGTTGCTGATGACATATTTCAAGCTCATCGTGATTTCAATGAAAATGATTATGAACTGTTATTGGCCCTTGATGAGAACAATCACCAACATGCTGGCGCATCTGCCCATCAGATCAATTCTTTGCCACAGTCCATCATACAGACTGACAACTTTGAAGAGGCGTGCGCCGTATGTCTTGAGGTCCCAGCTATGGGGGACACCATTCGTCATCTTCCTTGTTTGCACAAATTTCACAAAGATTGCATTGATCCTTGGCTCCATAGGAGGACATCGTGCCCGGTGTGCAAGTCATCTATCACCTAA 2310 0.4203 MDAGCVTDPTYEENMEDMEIDQIVDVPDTPDRLATRHVGRKYVGNPDVYENEKRDRGFPVVENGKNGRQAIFPLKNSNSDEMNNCMAVSPSKKSYTTQIAPIFRRSRTDKFFGHQLTLSNGSEKMEKGEDICAKFPSRSSSRVCGGVAVFDLTEENGQPQKQKQVFSHHVLKDNTTENKKELKASIENSPIPCIPDSSNSSSNAFAGKCKIDDKTLPCSNISVDRGKSIDLSSDSQQKTEKQTSLPPRLLSAPRFRGQKRLVRNGCISPHNIAARVKQSAEQNSQRTNDIEQSHAGNAVSNNTVSLSAINDIVADERSSSRVKGKELFIHPSSAHDAGTIHSASSSPVVNYEEANGTTSAFRNSLESFGGPGGWRTSRNCRNNNQSLHDINGHHMRRDNDSESFVSTHYRNRVDRRDIGSSQSSRNVRHPLENHADHVTLIISDAEQSTGPCPTADKLTKRQRKSGSTSRNPNSEIMILDSLGESSNSSSSRSSVVDAEVVELSPETTYTNRVSYDLDNDDSDARARQVEADERLARELQEQLYHEDSFDGREIDEHLAWELQREEDLLRTSIESHHISHPRSLSRAPSNRQPRSRSHQSPTNRRRVVPHLPLSNRVSQLRSRIINRSSTSAIPTRGRRLRFPVDMDFDMRLDILEALEDAVGDISDMGVADDIFQAHRDFNENDYELLLALDENNHQHAGASAHQINSLPQSIIQTDNFEEACAVCLEVPAMGDTIRHLPCLHKFHKDCIDPWLHRRTSCPVCKSSIT 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g0588 769 MobiDBLite consensus disorder prediction 582 597 - -
Bisa08g0588 769 CDD RING-H2_PA-TM-RING 724 765 - -
Bisa08g0588 769 FunFam RING/U-box superfamily protein 689 769 - -
Bisa08g0588 769 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 690 769 IPR013083 -
Bisa08g0588 769 MobiDBLite consensus disorder prediction 411 432 - -
Bisa08g0588 769 MobiDBLite consensus disorder prediction 227 254 - -
Bisa08g0588 769 ProSiteProfiles Zinc finger RING-type profile. 724 765 IPR001841 -
Bisa08g0588 769 SUPERFAMILY RING/U-box 716 768 - -
Bisa08g0588 769 PANTHER SI:CH211-59O9.10 399 769 - -
Bisa08g0588 769 MobiDBLite consensus disorder prediction 277 301 - -
Bisa08g0588 769 MobiDBLite consensus disorder prediction 575 609 - -
Bisa08g0588 769 SMART ring_2 724 764 IPR001841 -
Bisa08g0588 769 MobiDBLite consensus disorder prediction 444 476 - -
Bisa08g0588 769 MobiDBLite consensus disorder prediction 227 246 - -
Bisa08g0588 769 Pfam Ring finger domain 723 765 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g0588 Bisa-ChrBisa08 9807609 9817093 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g0588 15 769 C3H Transcription Factor Family AT1G04790 33.591 1.14e-85 282