Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g0538 ATGGAGCCGGGCATGAGATCAGCTGGCACTGCTGGGATTTTGGTGAAGAACAGGAACTCCTCGGGTTGTTTAATTGTTAGAAAGAAAGGGGATGCATTTCCTGGTGGGGTTGGTTCTACCAGCTCTCGGAAACTGTACGATACAAAAAAGGAAAGGAAAAGACAAAGTATGGCCTTAAGTGATTCAGGATCAAGCGATGAATTACTGATGCCTCCTAGCAGAAGGGTGGGTCCTGAGACTGTTCGAGTCTGCAATGGTTTGACTGCCTTTGAGCGGGGCATGGTTGAAGGGAGTGAATTTAGTAGACAGAGGGATAGAATGGCCCAAATTAGGCATAATGAGGATGGCCTGATTGATAAAAATGGTTTTGAAGAGAGGGAAATAAAACGGAATAAGTTTGATGCCTATGATTTTGATGAATATGACAGTATACATGTGGAAAAGATGCGAAGGAGGCACTTTGATTATAATGGAGTTGGTAGTGGTGAAGGAAAGTATATGGGGTCAATGCATGCTGCTAGAAGTGGCATTGAAAGGGAATTTAATACAGGCTCAAGCAGACCAATACTTGAAAAGAGAAAAAACTCCTATTATGATAGGGCTAGTGGCCTGTGCATGGGAAACAATTTAGATGACAACAGGTTTAGGATGGACAGGGATGGAGCTCAACTGCCTCTACAATTGTTGAGGGAGAAGTTTGTTGCCAATGCAAAGGAATCCATTAGAGTACAGGGGAAAAATGGTGTTTTAAAGGTGATGGTCAATAAGAAGAAGGTGGGGGGTCCATTAGAACACTATAATAACCACAAACCTGTTGAAAACCAACAGATTTTGAGGAGTGACGGCAGTGCTAAGAGGAATGTTCTGATCCATCCTTCATCATACTCGGAAACCACACTTGCTGAGAAATCAGATTTGGTTGTTAGGCCAGATAAAAAGAAGATGAAATCAAGAAAACTGCTGTCAAGTAAGGACAGTAAGGGTAATGAATTGGATTCGGAGAACAGTGACACATCATTGAACATGACACTAAAAAGTACTGAAGCTCGCAAGTTTGTCAAGAGGGTAAGTTCTGAGGATGAACAGATCCCTTTGCATGAGAAGCTCCCAACATCAAGAACGAAAGAAGGAAAAGTCAGGCGAGGTAGTGGCACAGAGAAGCAGAAACTACGAGAAAAAATAAGGGAGATGCTGCTGAGTACAGGTTGGACAATAGATTATCGGCCTCGAAGGAATAGAGACTATCTAGATGCAGTTTATATTAATCCAGGGGGCACAGCCTACTGGTCGATCATCAAGGCTTATGAAGCACTTCAAAAGCAATTGATTGAAGATAATAAGGAAATAAAACCCAGAGGAGACGGTTCTTCCATTGATCTTATTTCTGATGAGGTGCTCAGTCAATTAACAAGGAAAACTCGGAAGAAGATGGAGAAAGAATTGAAGAAGAAGCAAAGAGATTGTAGTGAGACTGATAGTGAAAAGGAACCTGAGATTAAAGGATATGCCGGCAACAAGCATACCATTAACATCTTTGATAGTGACAGCAACGAAGAGAAATTAAGCTCCTTTATAAAGCAGGGAAATAAGTCAATGAAAAATAAGATGACTGAAAATGCTGTTTCTGGTGCGAGTTCTAAATCTCATTTCCCCATCCATCAATCAAATGAGGGCTCAGAAAAACCATTATCTGTATGTGATCCCCATCTGCTACACGGCAGGAAAAGTAGAAAACATGGAAGATGTTCTTTGCTAGTTCGTAGTTCTAACAAGGGATTAAATCTAGAATCTGATGGCTTTGTTCCATATACGGGAAAACAGACAGTGCTTTCTTGGTTGATTGACTCTGGGACAGTGCAGTTAAGCCAAAAGGTTCAGTATCGTAAGCGGAAGCGAGTGATGCTGGAGGGATGGGTAACAAGAGATGGCATTCATTGTGGTTGCTGTAGTAAAATCCTCACAGTTTCAAAGTTTGAGATTCATGCAGGAAGCAAATTGCGCCAGCCATTCCAAAACATCTATTTGGATTCTGGATTTTCTCTTCTACAGTGCCAAATAGATGCGTGGAATAGACTAGAGAATTCTGAAAAGATCGCTTTCCATTCGGTAGATACAGATGGTGATAATCCAAATGATGATACTTGTGGTATATGCGGAGATGGTGGAGATTTAATTTGTTGTGATGACTGCCCATCAACTTTTCATCAGAATTGCCTGGATATACGGATGCTTCCCCATGGAGAATGGCATTGTCCTAATTGCACCTGCAAATTCTGTGGAATTGCCAGTGGGACTGTTAAAAAACGAGATGATGCAACTGTATATGACTTACAAACTTGCAAGTTATGCGAGAAAAAATGTATTTACCATGAACCTTGTGTGAAGGAGATAGATGCCCTTCCTAATGATGGCAATAATTCAGGCCTTTCTTTTTGTGGGAAAGAGTGCCAAGAGCTTTTTGGGCACCTAAAGAAGTACCTTAGTTCCAAGCATGAACTAGAAGCAGGCTTTTCGTGGTCTCTTATTCATAGAACAGATGAAGAGTCTGAAGCAGCTACTAGAGGGATTTCTCAAATGGTAGAATGTCACTCCAAGCTAGCTGTTGCTCTTACTGTGATGGATGAGTGTTTTTTACCCATTGTTGACCGGAGAAGTGGGATCAGCTTAATTCGCAATATTCTATATAATAGTGGGTCAAACTTCAATCGGCTGAACTACAGTGGTTTTTACACTGCTGTTTTGGAACGGGGTGATGATATAATTTCTGCAGCATCTATAAGGTTCCAAGGGACGAAGTTAGTGGAAATGCCATTTATTGGAACTCGCCATATATATAGGCATCAGGGGATGTGTCGCCGCCTTTTTTCTGCCGTTGAATCGGTTGAGAAACTGGTTATTCCTGCAATTTCTGAACTCGTGCATACATGGACAACAATTTTTGGCTTCACACAACTTGAGGAATCACTCAGGCAAGATATGAAGTCATTGAATATGTTGGTCTTCCCTGGTATAGATATGTTACAGAAGGTGCTGGTGAAGCAAGAAAAACTTGAGGGGAAAATAACCACTGCAGGTGCTGAGCAAATCGAAAAGCAAGATGAGGTTCCTATCAAGTCGAATATGGCAAATAGACCAGATATGGATTCCTTAGCTCAACAAGATCCTCATGGAAGTGAAGATGCTGGTTCAAATGCTGCCAATGAGACAACTGATGAATGCAGTGATGCTTCTCAAGAACTTAATAATCAAGCTTTGGCCGACGGGATTGTATGTTCCAAGTCTCACTCTGGTGATAGGTTGACTGAATCGGCTTCAGATAAATGTGTTTCTCCCTCTAGTACTAGTCATGGTGCTTTGGAGATTGAAAATAACATGGTGTCAGCATTTCCTATCAAAGAAAATTTGCATCTTTCTCCCACATGTCAAGTCATTTTGCAAAATGGTGCTTCCACTGTTACATGTCATCCATTAGATGCTCCTAGTTCCCTTCAAAATCCAGTTTTGGTTCAGGGAACTGCTTGTTCTAACTCTGATACGGCAGAACATCTCGTTGAACCTGTTTCTGACTGGAAATGTCACTCTCCCACTACTATGAATTGTAGTTCATCGGAGTTTGAGAGTATTCCAGTTTCAGGTTGTCATGTAGTTGATAATGCTACGTCTTCTAAAGAGGTTGATATGATCGATGCCGTTGAGGTTCTTGAAGAGGGTTTGTCTGAAGAGAATATTACCGAAGGGATCAATGAAAATAGAGCTGTTTCTGGTTCTCCTCTCAATCATACTAATTTGAATGGTGAAACTGCCTATGATAGAGAAAGAAAATTATGCGTGGGCACAAAAGTTGCCTCAAATTTATCGAATTCTGATCCTGATGAAAGTGGCCTAAATGCATCCATTGATAGTTCTAAGTTAACTTCATCATATGCCTATGCTTTTGCCTGCCAGAAATCCTCAAGTTTGCTTCTGGCACAAGATCTGTGTCATATGTTAAGATGGTCAAATGGTGGGATTACTGGAATGTATAATATGCAATCCTGTTTGGGCATATCATTTGGTCAGAAGTATCAGTATAGGTCCATTGGCTTAAATGTTGTTCCCTGTAAAAATGGTGCAACTGCCGGTTTTATGGATGAAACAGAATTTGTGGTTTGGGATTTTCTGAGAAGTCATAGTCCAACTCCCACATGTTTCCACCGCTCCATCTTTTCAGTGAATCACTGCAACCTCATCCCAGTGGATCCTCCCAGAACTATCTCTTCTGCTTTAGTGGAAAACAACGGTTCACCTATAACAATTTCACCAGCTGACTCAGGAACTAGAACTGGAGAGGTGAAAAGGGTCACCAAGAGAATCAATGTATTGGTCAAAATAAATCTAGATGGTTCTGGGCAACTTGCTTCACATGGGCTGTTCGATGTGCACTTGGGGGCAACTGCTGACATCTACATTGATCATTGA 4458 0.413 MEPGMRSAGTAGILVKNRNSSGCLIVRKKGDAFPGGVGSTSSRKLYDTKKERKRQSMALSDSGSSDELLMPPSRRVGPETVRVCNGLTAFERGMVEGSEFSRQRDRMAQIRHNEDGLIDKNGFEEREIKRNKFDAYDFDEYDSIHVEKMRRRHFDYNGVGSGEGKYMGSMHAARSGIEREFNTGSSRPILEKRKNSYYDRASGLCMGNNLDDNRFRMDRDGAQLPLQLLREKFVANAKESIRVQGKNGVLKVMVNKKKVGGPLEHYNNHKPVENQQILRSDGSAKRNVLIHPSSYSETTLAEKSDLVVRPDKKKMKSRKLLSSKDSKGNELDSENSDTSLNMTLKSTEARKFVKRVSSEDEQIPLHEKLPTSRTKEGKVRRGSGTEKQKLREKIREMLLSTGWTIDYRPRRNRDYLDAVYINPGGTAYWSIIKAYEALQKQLIEDNKEIKPRGDGSSIDLISDEVLSQLTRKTRKKMEKELKKKQRDCSETDSEKEPEIKGYAGNKHTINIFDSDSNEEKLSSFIKQGNKSMKNKMTENAVSGASSKSHFPIHQSNEGSEKPLSVCDPHLLHGRKSRKHGRCSLLVRSSNKGLNLESDGFVPYTGKQTVLSWLIDSGTVQLSQKVQYRKRKRVMLEGWVTRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIYLDSGFSLLQCQIDAWNRLENSEKIAFHSVDTDGDNPNDDTCGICGDGGDLICCDDCPSTFHQNCLDIRMLPHGEWHCPNCTCKFCGIASGTVKKRDDATVYDLQTCKLCEKKCIYHEPCVKEIDALPNDGNNSGLSFCGKECQELFGHLKKYLSSKHELEAGFSWSLIHRTDEESEAATRGISQMVECHSKLAVALTVMDECFLPIVDRRSGISLIRNILYNSGSNFNRLNYSGFYTAVLERGDDIISAASIRFQGTKLVEMPFIGTRHIYRHQGMCRRLFSAVESVEKLVIPAISELVHTWTTIFGFTQLEESLRQDMKSLNMLVFPGIDMLQKVLVKQEKLEGKITTAGAEQIEKQDEVPIKSNMANRPDMDSLAQQDPHGSEDAGSNAANETTDECSDASQELNNQALADGIVCSKSHSGDRLTESASDKCVSPSSTSHGALEIENNMVSAFPIKENLHLSPTCQVILQNGASTVTCHPLDAPSSLQNPVLVQGTACSNSDTAEHLVEPVSDWKCHSPTTMNCSSSEFESIPVSGCHVVDNATSSKEVDMIDAVEVLEEGLSEENITEGINENRAVSGSPLNHTNLNGETAYDRERKLCVGTKVASNLSNSDPDESGLNASIDSSKLTSSYAYAFACQKSSSLLLAQDLCHMLRWSNGGITGMYNMQSCLGISFGQKYQYRSIGLNVVPCKNGATAGFMDETEFVVWDFLRSHSPTPTCFHRSIFSVNHCNLIPVDPPRTISSALVENNGSPITISPADSGTRTGEVKRVTKRINVLVKINLDGSGQLASHGLFDVHLGATADIYIDH 1485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g0538 1485 MobiDBLite consensus disorder prediction 538 563 - -
Bisa08g0538 1485 Pfam Tify domain binding domain 637 687 IPR032308 -
Bisa08g0538 1485 SUPERFAMILY FYVE/PHD zinc finger 705 760 IPR011011 -
Bisa08g0538 1485 PANTHER PHD FINGER PROTEIN 12 371 1106 IPR042163 GO:0003714|GO:0045892
Bisa08g0538 1485 MobiDBLite consensus disorder prediction 355 388 - -
Bisa08g0538 1485 ProSitePatterns Zinc finger PHD-type signature. 715 754 IPR019786 -
Bisa08g0538 1485 MobiDBLite consensus disorder prediction 476 502 - -
Bisa08g0538 1485 MobiDBLite consensus disorder prediction 309 343 - -
Bisa08g0538 1485 MobiDBLite consensus disorder prediction 538 561 - -
Bisa08g0538 1485 SMART PHD_3 714 755 IPR001965 -
Bisa08g0538 1485 MobiDBLite consensus disorder prediction 1028 1076 - -
Bisa08g0538 1485 MobiDBLite consensus disorder prediction 1095 1115 - -
Bisa08g0538 1485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 702 800 IPR013083 -
Bisa08g0538 1485 ProSiteProfiles Zinc finger PHD-type profile. 712 757 IPR019787 -
Bisa08g0538 1485 Pfam PHD-finger 715 757 IPR019787 -
Bisa08g0538 1485 MobiDBLite consensus disorder prediction 1056 1076 - -
Bisa08g0538 1485 Coils Coil 467 494 - -
Bisa08g0538 1485 MobiDBLite consensus disorder prediction 36 77 - -
Bisa08g0538 1485 CDD PHD2_CHD_II 715 754 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g0538 Bisa-ChrBisa08 9094686 9104612 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g0538 4 1063 PHD Transcription Factor Family AT4G14920 48.026 0.0 901
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bisa08g0538 TDBD 9.1e-21 No_clan