Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g0495 ATGAGCTTCGCATACAACTTGAGCCTTACTTTGCTTTTCCTTGAGGCAATCCTAATGGGACTTCCACTCGGTTGGGCCCATGGTGTTCAAGAGGTATTTTCCAATGAAGTTTCTCTCCTTCAGCTTCCATGTTTTCGGTTCACCGTTCATGGAGTTTACGAGCAAGACTGGCACTTGGTTAAGGTGATGAGTGAATCCCATCCTTTCGTCTTTCCTTGCTTCAGTCTCTATCCTTGGTTTGTCGCAGAGAAGAGCCATCAGTCCCCATCTTTGCTTCACGGTGCTTCATCTACTCATCTTTATAATACCAATGCAATAAAATCAGAGGAAGAAACAAGTCAGGATAGCGCCATGCGATGCGACGGTGTGCGTGGTCTTCATGGTCTGATGAGGCACCCTGCTATTGATCCTAAAGAATGCGATGATGGCATGGTAGGTGTTGCAACTTGCGATATGGGCCTGTTTCTTCTCGTCTGTCTCTCTCTAAATCCATCCCCAGCACACACTGTGTCTCAGCGGGAGACCCCTCTTCTCCTCCCTATGGAGCTTCAAAAACGCCAAGATCAGAGTCTCCCTGAGAGGAAAGGCCAGAAGCGGAAGCTGGAGGAGGATTTCGAAGACGAGCGAGAGATCTCGGCGCCTCCCACCGGCGACGCCCGAGACGCCCTCCTCGCCGAGGTCACGGCGCAGGTTGAAATCCTCGACTCCAATTTCTCGTGGCGGGAAGCCGATCGAGCTGCGGCTAAGCGCGCCACTCACGTCCTCGCCGAGCTTGCTAAGAATGAGGAAGTAGTGAACGTAATCGTTGAAGGAGGAGCTATTCCGGCTTTGGTTAGGCATCTTCAAGCGCCGCCTTCGAGTGAAAACGATCGTGGTCAAAAGCCATTTGAGCACGAGGTCGAGAAAGGGAGTGCTTTCGCTTTAGGACTTCTTGCTGTCAAGCCTGAACATCAACAACTCATTGTTGACAATGGTGCCTTAAAGCATCTTGTTGATCTGTTAAAGAGACATAAGAATTGCTCTGCTTCTCGTGCTGTGAATAGTGTCATTCGTAGGGCTGCAGATGCAATCACTAATCTTGCTCATGAGAACAGTAGCATTAAAACCCGTGTCAGGATGGAAGGTGGAGTTCCACCACTTGTTGAGTTGCTTGAATTTACTGATACAAAGGTGCAAAGAGCGGCTGCTGGTGCACTGCGAACCCTGGCTTTTAAAAATGATGAAAATAAAAATCAGATTGTTGAATGCAATGCTCTTCCAACTTTAATTTTAATGCTTCGTTCTGAAGATGCTGCTATTCATTATGAAGCGGTTGGTGTAATTGGAAATTTGGTACACTCTTCCCCTAATATAAAGAAAGAAGTTCTTCTTGCGGGAGCTTTACAACCTGTTATTGGATTACTTAGCTCCTGCTGCTCTGAGAGCCAAAGGGAAGCAGCCTTGTTACTTGGACAGTTTGCAGCAACTGATTCAGACTGTAAGGTCTACATTGTTCAGAGAGGTGCTGTCCGACCTTTGATAGATATGCTTCAGTCCCCTGATGTACAACTCAGAGAAATGTCTGCCTTTGCCTTGGGGAGATTGGCACAGGATACCCATAACCAAGCTGGTATTGCACACAATGGTGGCTTAGTGCCATTACTCAAGCTCCTGGACTCAAAAAATGGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGTGTCTGATTTCATTAGGGTAGGTGGTGTTCAGAGACTTCAGGATGGAGAGTTTATTGTTCAAGCAACAAAAGATTGTGTTGCCAAGACATTGAAAAGATTAGAGGAGAAGATTCATGGCCGTGTCCTGAACCATTTGTTATATCTTATGCGAGTTTCAGAAAAGGCTGTCCAAAGACGACTTGCTTTGGCTCTTGCTCATCTTTGTTCTGCAGATGATCAGAGAACCATATTCATTGATAACAATGGTTTGGAATTGCTTATTGGGCTTCTTGGCTCTTCTAGTCCTAAGCAGCAACTTGATGGCGCTGTTGCTTTATGCAAGTTGGCCAACAAAGCCATGACTCTTTCACCGATAGATGCTGCTCCCCCTTCTCCAACACCCCAGGTCTATTTAGGGGAGCAGTATGTGAACAATGCTACATTGTCTGATGTTACATTTTTGGTTGAAGGGAAACGTTTTTATGCTCACAGAATCTGCTTACTTGCATCTTCAGATGCATTTCGTGCAATGTTTGATGGTGGTTATAGGGAGAAGGATGCAAGAGACATAGAGATTCCAAATATTAGATGGGAGGTTTTTGAGCTTATGATGAGATTCATATATACTGGGTCAGTTGATGTTACTCTTGATATTGCCCAAGATCTCCTCCGAGCTGCTGATCAATATCTCTTGGAAGGACTTAAGAGACTGTGTGAGTACACAATAGCACAGGATATATCACTGGAGAATGTGTCAAGTATGTATGAACTCTCCGAAGCTTTCAATGCTATATCATTGAGGCACACGTGCATCCTTTTTATCATGGAGCAGTTTGATAAATTGAGTGCCAGACCAGGGCACTCTTGTCTGATACAGCGTATAATACCAGAGATCCGCAATTATTTTGCTAAAGCACTCACAAAAGCTAACTCCCGTGACATCCGGTTGTAG 2658 0.4541 MSFAYNLSLTLLFLEAILMGLPLGWAHGVQEVFSNEVSLLQLPCFRFTVHGVYEQDWHLVKVMSESHPFVFPCFSLYPWFVAEKSHQSPSLLHGASSTHLYNTNAIKSEEETSQDSAMRCDGVRGLHGLMRHPAIDPKECDDGMVGVATCDMGLFLLVCLSLNPSPAHTVSQRETPLLLPMELQKRQDQSLPERKGQKRKLEEDFEDEREISAPPTGDARDALLAEVTAQVEILDSNFSWREADRAAAKRATHVLAELAKNEEVVNVIVEGGAIPALVRHLQAPPSSENDRGQKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALKHLVDLLKRHKNCSASRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGVPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVYIVQRGAVRPLIDMLQSPDVQLREMSAFALGRLAQDTHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGVQRLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKAVQRRLALALAHLCSADDQRTIFIDNNGLELLIGLLGSSSPKQQLDGAVALCKLANKAMTLSPIDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFNAISLRHTCILFIMEQFDKLSARPGHSCLIQRIIPEIRNYFAKALTKANSRDIRL 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g0495 885 SUPERFAMILY ARM repeat 616 791 IPR016024 -
Bisa08g0495 885 Gene3D - 476 599 IPR011989 -
Bisa08g0495 885 Gene3D - 600 692 IPR011989 -
Bisa08g0495 885 MobiDBLite consensus disorder prediction 184 216 - -
Bisa08g0495 885 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 272 326 IPR000225 GO:0005515
Bisa08g0495 885 Pfam Armadillo/beta-catenin-like repeat 371 403 IPR000225 GO:0005515
Bisa08g0495 885 Pfam Armadillo/beta-catenin-like repeat 406 445 IPR000225 GO:0005515
Bisa08g0495 885 Pfam Armadillo/beta-catenin-like repeat 490 529 IPR000225 GO:0005515
Bisa08g0495 885 SUPERFAMILY POZ domain 710 812 IPR011333 -
Bisa08g0495 885 Gene3D Potassium Channel Kv1.1; Chain A 699 845 IPR011333 -
Bisa08g0495 885 SMART arm_5 448 488 IPR000225 GO:0005515
Bisa08g0495 885 SMART arm_5 364 404 IPR000225 GO:0005515
Bisa08g0495 885 SMART arm_5 531 571 IPR000225 GO:0005515
Bisa08g0495 885 SMART arm_5 406 446 IPR000225 GO:0005515
Bisa08g0495 885 SMART arm_5 646 686 IPR000225 GO:0005515
Bisa08g0495 885 SMART arm_5 314 362 IPR000225 GO:0005515
Bisa08g0495 885 SMART arm_5 261 313 IPR000225 GO:0005515
Bisa08g0495 885 SMART arm_5 490 530 IPR000225 GO:0005515
Bisa08g0495 885 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 417 459 IPR000225 GO:0005515
Bisa08g0495 885 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 375 410 IPR000225 GO:0005515
Bisa08g0495 885 ProSiteProfiles BTB domain profile. 718 785 IPR000210 GO:0005515
Bisa08g0495 885 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 325 375 IPR000225 GO:0005515
Bisa08g0495 885 MobiDBLite consensus disorder prediction 187 215 - -
Bisa08g0495 885 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 542 584 IPR000225 GO:0005515
Bisa08g0495 885 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 501 543 IPR000225 GO:0005515
Bisa08g0495 885 SMART BTB_4 718 815 IPR000210 GO:0005515
Bisa08g0495 885 Pfam BTB/POZ domain 711 813 IPR000210 GO:0005515
Bisa08g0495 885 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 181 879 IPR044282 -
Bisa08g0495 885 Gene3D - 342 475 IPR011989 -
Bisa08g0495 885 Gene3D - 223 341 IPR011989 -
Bisa08g0495 885 SUPERFAMILY ARM repeat 249 588 IPR016024 -
Bisa08g0495 885 CDD BTB_POZ_ARIA_plant 705 820 - -
Bisa08g0495 885 FunFam Armadillo/beta-catenin repeat family protein 709 853 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g0495 Bisa-ChrBisa08 8281041 8295285 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g0495 359 581 U-box Gene Family AT1G23030 27.313 3.14e-13 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Bisa08g0495 BTB 8.4e-26 CL0033