Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g0483 ATGGTCATGGCTCAGCTGCAGAGCCACCAGCAGCAGCAGCAGCCGCCCATCGACCATGCCCAGAAGACCAAGACTCTCATTTCTGCCCTCAACCTCGTCTCCCGTAACCTCCCTCTGCCTCCTGACCTTTTCAACACCGTTTCTTCCATCTACCACGGCGCCGAAGATGCTTCCAGTAACGGCCCTCACTGCGAGGTCCCTGACGGGAGTGGCGGTGGCGCCGGATCTGAGGAGAAACGGGCGGATGCGCCCGCCGACAAGGGTTTGGATGATGTGGGGAATTCTAGAGAAGATTTGTTGACAGATCTTGAAGATGCACTAGTGAAGCAACGACCGAATTGTGTGTCAGGTTTCAAATTGAAGGAAGAAAGGGAAAACCGTTATCAAAGTCAGATTCAGCGTCGGTTAAATGATCTTGAAGAATTGCCTTCAAGCAGGGGAGATGACCTGCAGACGAAGTGCTTGCTTGAACTATATGGACTGAAGCTAGCAGAGTTGCAGAGGAAGGTTCGGTCTGATGTGAGTTCTGAATACTGGCTCAATGTTAAATGTGCATATCCTGACAGACAATTGTTTGATTGGGGAATGATGCGGCTGCGTCGTCCTATGTATGGTGTTGGAGATCCATTTGCCATGGATGCTGATGATCAGTTAAGGAAGAAACGGGATGCTGAGAGATTGTCAAAATTAGAAGAGGAGGAAAAGAATCATATAGAGACCAGAAAAAGAAAATTTTTTGCGGAGATACTCAATGCTGTCCGTGAGTTTCAATTACAAATTCAAGCTTCTTTGAAACGGCGAAAACAGAGAAATGATGGTGTCCAGGCATGGCATGGAAGGCAAAGACAACGTGCAACACGTGCTGAGAAATTGAGGTTCCAAGCCTTAAAGGCTGATGATCAAGAAGCTTATATGAGAATGGTGAAAGAGAGTAAGAACGAAAGATTGACTTTGCTTCTTGAAGAAACAAATAAGTTACTTGTGAATTTGGGAGCAGCTGTACAACGTCAAAAGGACTCAAAACAAACAGATGGCATTGAACCCTTGGAAGATTCAGAAGCTGATCTACCAGAGTCAGATGCTTCAAAGAATGGAATATCTAAGGAATCACCTCCCGAGGAGGATATGGATATGATAGATTCTGATCAAAATGGTGATACAAGTGATTTACTTGAAGGTCAACGGCAATACAACTCTGCCATACATTCAATTCAAGAAAAGGTAACTGAGCAACCTTCTATTCTTCAAGGTGGAGAATTAAGACCATATCAGCTAGAAGGGCTCCAGTGGATGCTTTCTTTGTTTAATAACAATCTAAATGGAATTTTGGCTGATGAAATGGGGCTGGGGAAGACAATACAAACAATTTCCTTGATAGCATATCTTATTGAGAACAAGGGTGTGACTGGTCCCCACTTGATTGTGGCTCCAAAGGCTGTTCTACCCAATTGGATCAATGAATTCTCAACATGGGTTCCTAGTATTACAGCTGTTCTTTATGATGGACGTCTGGAAGAGAGGAAAGCAATAAAGGAAGAATTGTCAGGAGAGGGGAAGTTTAATGTGCTGATAACACACTATGATCTTATAATGAGAGATAAAGCATTTCTCAAGAAAATTAATTGGTACTACCTGATTGTGGATGAAGGACATCGGTTGAAGAACCATGAGTGTGCTTTAGCAAGAACCCTTGACTCTGGCTATCACATCCAACGCAGACTCCTGCTGACTGGCACCCCTATTCAGAACAGTTTGCAGGAATTGTGGTCCCTGCTTAATTTTCTCCTTCCAAGCATTTTCAATTCAGTTCAAAATTTTGAAGACTGGTTTAATGCCCCCTTTGCAGACCGAGTTGATGTCTCTCTAACTGATGAAGAACAGCTATTAATCATTCGTCGTCTGCATCAAGTAATAAGGCCCTTCATATTAAGAAGAAAGAAAGATGAGGTGGAAAAATATCTCCCTGGGAAATCTCAGGTCATACTCAAGTGTGATATGTCATCATGGCAGAAAGTATATTATCAACAAGTTACTGACTTGGGCAGAGTTGGCTTAGACAATGGTTCTGGGAAATCAAAGAGTCTACAGAACCTGACAATGCAACTCAGAAAGTGTTGCAACCATCCATACCTCTTTGTGGGAGAACATAATATGTGGAACAAGGACGAGATTGTCAGGGCATCAGGGAAGTTTGAACTTCTTGACCGTTTGCTACCAAAACTTCGAAGGACTGGGCACAGAGTCCTTATGTTCTCACAAATGACTCGTCTCATGGATATTCTTGAAATTTATCTGCGACTTCATGATTTCAAGTTTCTTAGACTTGATGGCTCAACAAAAACTGAGGAGAGAGGGACTCTGCTGCGACAATTCAACGCTCCTGACTCTCCATACTTTATGTTTCTTTTGAGCACACGCGCTGGAGGCCTTGGTCTAAACTTACAAACTGCAGATACTGTTATAATCTTTGATAGTGATTGGAACCCTCAAATGGATCAACAGGCTGAGGATCGAGCCCATCGTATTGGACAAAAAAAGGAAGTTAGGGTTTTTGTGTTGGTTAGTGTGGGATCAATTGAAGAGGTGATTCTGGAGCGTGCAAAACAAAAGATGGGCATTGACGCTAAAGTCATCCAGGCAGGACTTTTTAACACAACTTCAACAGCTCAGGATAGAAGAGAAATGTTGGAGGAGATTATGCGGCGAGGTACAAGCTCACTTGGGACTGATGTACCAAGTGAGAGAGAAATCAACCGCCTTGCAGCCCGATCAGATGAAGAATTTTGGTTATTTGAGAGAATGGATGAAGAGAGAAGGCAAAAGGAGAACTACAGATCTCGTCTCATGGAAGAACACGAAGTGCCAGATTGGGTATACTCTGCAGCACATAATAAGGATGACAAGGCCAAAGGTTTTGATGTCATTAGTGTTACTGGAAAGCGGAAAAGAAAAGAAGTGGTATACGCAGATACGATAAGTGATCTACAATGGATGAAAGCTGTGGAGAATGGGGAAGATATATCAAAGCTTTCAGCTAAAGGGAGAAGAAGAGAACACCAGCCATCTGATAGTAGCACAGTTGCTAGTGATAATGTTGGGGCAGAGGAAAGTTTATCAGAATTACAGAATGAAAGCTTCCCCATGGCAAGAGAGCGATCGAGCGAAGATTCTTTTCATGTAACCCCTGGTCCTCCCCCAAAGAGAGCCAGACCTGAAGGAATACATACACAGAAACATGAATATGAGGGGATCAGAGGAAGTGGTTTGAATGAACATATGTTTTCCTGGAATACCCATAGAAAGAAGAGATCAAGCAATCTTGCTCAGAGTTCATTATCTGATTCTAGGGGGCAGAATTCAAATGGAAGAGCAAACTGGAGCTGA 3384 0.4326 MVMAQLQSHQQQQQPPIDHAQKTKTLISALNLVSRNLPLPPDLFNTVSSIYHGAEDASSNGPHCEVPDGSGGGAGSEEKRADAPADKGLDDVGNSREDLLTDLEDALVKQRPNCVSGFKLKEERENRYQSQIQRRLNDLEELPSSRGDDLQTKCLLELYGLKLAELQRKVRSDVSSEYWLNVKCAYPDRQLFDWGMMRLRRPMYGVGDPFAMDADDQLRKKRDAERLSKLEEEEKNHIETRKRKFFAEILNAVREFQLQIQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDSKQTDGIEPLEDSEADLPESDASKNGISKESPPEEDMDMIDSDQNGDTSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRPYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLIENKGVTGPHLIVAPKAVLPNWINEFSTWVPSITAVLYDGRLEERKAIKEELSGEGKFNVLITHYDLIMRDKAFLKKINWYYLIVDEGHRLKNHECALARTLDSGYHIQRRLLLTGTPIQNSLQELWSLLNFLLPSIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKYLPGKSQVILKCDMSSWQKVYYQQVTDLGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGEHNMWNKDEIVRASGKFELLDRLLPKLRRTGHRVLMFSQMTRLMDILEIYLRLHDFKFLRLDGSTKTEERGTLLRQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFERMDEERRQKENYRSRLMEEHEVPDWVYSAAHNKDDKAKGFDVISVTGKRKRKEVVYADTISDLQWMKAVENGEDISKLSAKGRRREHQPSDSSTVASDNVGAEESLSELQNESFPMARERSSEDSFHVTPGPPPKRARPEGIHTQKHEYEGIRGSGLNEHMFSWNTHRKKRSSNLAQSSLSDSRGQNSNGRANWS 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g0483 1127 Coils Coil 934 954 - -
Bisa08g0483 1127 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 396 645 IPR027417 -
Bisa08g0483 1127 FunFam Probable ATP-dependent DNA helicase CHR12 651 949 - -
Bisa08g0483 1127 Gene3D - 388 644 IPR038718 -
Bisa08g0483 1127 MobiDBLite consensus disorder prediction 1011 1127 - -
Bisa08g0483 1127 FunFam Chromatin structure-remodeling complex protein SYD 411 654 - -
Bisa08g0483 1127 Pfam Snf2-ATP coupling, chromatin remodelling complex 932 998 IPR029295 GO:0042393
Bisa08g0483 1127 MobiDBLite consensus disorder prediction 79 95 - -
Bisa08g0483 1127 Gene3D - 651 950 IPR027417 -
Bisa08g0483 1127 MobiDBLite consensus disorder prediction 1071 1086 - -
Bisa08g0483 1127 MobiDBLite consensus disorder prediction 337 390 - -
Bisa08g0483 1127 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 432 598 IPR014001 -
Bisa08g0483 1127 MobiDBLite consensus disorder prediction 55 95 - -
Bisa08g0483 1127 Pfam Helicase conserved C-terminal domain 730 843 IPR001650 -
Bisa08g0483 1127 MobiDBLite consensus disorder prediction 1100 1127 - -
Bisa08g0483 1127 CDD SF2_C_SNF 721 854 - -
Bisa08g0483 1127 Coils Coil 214 234 - -
Bisa08g0483 1127 SMART ultradead3 416 609 IPR014001 -
Bisa08g0483 1127 SMART SnAC_2 936 998 IPR029295 GO:0042393
Bisa08g0483 1127 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 647 897 IPR027417 -
Bisa08g0483 1127 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 733 900 IPR001650 -
Bisa08g0483 1127 PANTHER SNF2/RAD54 HELICASE FAMILY 160 1018 - -
Bisa08g0483 1127 MobiDBLite consensus disorder prediction 1024 1048 - -
Bisa08g0483 1127 SMART helicmild6 759 843 IPR001650 -
Bisa08g0483 1127 Pfam SNF2-related domain 423 711 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g0483 Bisa-ChrBisa08 8143543 8152880 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g0483 402 870 RAD5 or RAD16-like Gene Family AT1G02670 27.176 1.64e-33 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bisa08g0483 SNF2_N 3.5e-68 CL0023