LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa08g0478	ATGAAACGAAAGCTTGTGAGGTTGCTCTCAATGGCGCAAAGAGAGGCATTAGTTGACCAAGGAAGCAGGTGGATGGATGGGTTAGGGAGTGAAAGCTTCTCAGTTTCTGAGGATTGGGTTGGTTTCGCTTTCGGTTTCACAGGCAGAATAGCAAAAAGTCTTCAAAATAGTGCCGACACTGATTCAAATCAGAATTATACCGTTACCCTCATCATCTCCCTCATTTTGAAAACCCTCTTCCCTCCTCCCACGTTTCCACACTCTTCTTCGATCTTTCCCACTGTCCTCTTCGACCTTCGTTTCCGCACAAATGAACTTCCTCCAGCCCTAAAGATCCAAGCCAAGCCTCATCTTCAAGTAGAAGTTCTTCGCCACTCTTGCAGCTTCTTGCGCACAACGCTCACCCTGATGCAAGAATTTCTGGGTTCAGTTCGCCGATCCTTGGTCTTCAGGAGCCCAGGTGGGGACGATGGAGGGTTTGGTGTTAGCGGTCTGGTTGACAAGATTGGGTCCAGCATTCGCAAATCACGAATTGGGCTCTTTTCTCAACCGCGTGTCAGGGCTCTGCCGCAGGCCCCCAAGGACACCGCGCCTTCGATCCGGTGGCGGAAGGGTGAGTTGATTGGTTGTGGTGCCTTTGGTCGGGTCTACATGGGAATGAACCTCGACTCTGGGGAGCTTATTGCTGTTAAGCAGGTTTTAATAGCAGCGAATAGTGCTTCAAAAGAGAAAACACAGGCTCATATTTGGGAGCTCGAAGAAGAAGTGAAGCTTCTGAAGAATCTTAAACACCCAAATATTGTTAGATACCTGGGAACTGCTAGAGAGAAGGATTCTTTGAATATTCTGCTGGAATTTGTACCTGGTGGATCTATCTCATCACTCTTGGGGAAATTTGGATCCTTCCCTGAGTCCGTTATAAAAATGTATACGAAACAACTCTTAATGGGCCTTGAATACCTTCACAAGAATGGAATTATTCACAGGGATATTAAGGGTGCAAACATTCTTGTTGATAACAAAGGTTGCATTAAACTAGCTGACTTTGGTGCATCCAAAAAAGTTGTTGAGCTGGCTACCATAAATGGTGCAAAATCAATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTTATTCTGCAGACAGGACATAGCTTCTCTGCTGATATTTGGAGTGTTGGATGCACTGTGATAGAGATGGCCACAGGGAAGCCTCCATGGAGCCAACAATATCAGGAGGTTGCTGCTCTTTTCCATATCGGGACAACTAAATCTCATCCACCCATACCTGAACATCTTTCTGCTGAGGCAAAGGATTTCTTGTTGAAATGCTTACAGAGGGAACCAGATTTAAGGCCTTCTGCATCAGAATTGTTACAGCATCCATTTGTCACCTGTGAGTTACAGGAATGTAATCCCACATTACGCAGTTCAATTGTGGAATCTTGCAAGCAGATGGCAACATCTGGAACGAACTCTAGAAACTTTTTGGATTCTGTCAAGGGAGCAGGCCTCAAGGATGTTTGTCAGATGGATAGCTTAAGATGCTCAACTGTGTATCCTGAAACTCTTTTAAAATCAGGTCCCTACCAAGGAGCAAACAATTGTGATGATGACGACATGTGTCAGATAGATGACAAAGATGATCTTTTTTTCAATGCATCAGTAAAGTCTAAATCTCTCTTTTCATCAGATGATATAAAGAGTTTCAATCCTATGTGTGAACCTATGGATGACTGGCCTTGCAAGTTTGATGAAAATCTAAATTTGGGGAGAAGTAGAACAAACATATCTCCTGATCAGACAATTAGTAAGACTATGCAAAGCTCTGAAGCATCTCTGAAGGTGGAGAATGACTTTTCATTTCCAAGTGAGCCTTTAGGAGCTGATGATGATGATGAGGTGACCGAATCAAAGATTAGAGATTTTCTGGACGAAAAGGCTTTGGAACTGAACAAACTCCAAACTCCTCTTTACGAAGAATTCTTTAGCATATCAAATGCAGCTGCTCCTCCAGCACCTGTTTCAATTGCACACGATGAAGTTGTTTCAGATGTCTCAAGTGTAACGCCAAAAAGCAGGTCACCTAGTCAGGCTAGCAGAAGATTCACAGTGTTTGACGGCCCCAATGTTGCAAGGCTTGGGAGTCATAACAAAAGTCAATCAAAAGTTAGTGGTGCAAATATTCAACCTTTGCAGGAAATCCATCCATCTGAGTTTAATGAATGGAAAGAGACTCTTCATAATACTCAGCTGGAATCATTTAATGCTAGCTCAAGCTTCTCTGAAAGACAAAGGAAATGGAAAGAAGAACTTGTTGAAGAGCTTCAGAGGAAGCGAGAGATGATGCGTCAATCAGGCTTCGGAGGGAAAATAACATCCCCAAATGATCGCAATTTTCATAAACAGACAGATCGGTTACGCTTTGCATTTCCAGGCTAG	2442	0.4361	MKRKLVRLLSMAQREALVDQGSRWMDGLGSESFSVSEDWVGFAFGFTGRIAKSLQNSADTDSNQNYTVTLIISLILKTLFPPPTFPHSSSIFPTVLFDLRFRTNELPPALKIQAKPHLQVEVLRHSCSFLRTTLTLMQEFLGSVRRSLVFRSPGGDDGGFGVSGLVDKIGSSIRKSRIGLFSQPRVRALPQAPKDTAPSIRWRKGELIGCGAFGRVYMGMNLDSGELIAVKQVLIAANSASKEKTQAHIWELEEEVKLLKNLKHPNIVRYLGTAREKDSLNILLEFVPGGSISSLLGKFGSFPESVIKMYTKQLLMGLEYLHKNGIIHRDIKGANILVDNKGCIKLADFGASKKVVELATINGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQEVAALFHIGTTKSHPPIPEHLSAEAKDFLLKCLQREPDLRPSASELLQHPFVTCELQECNPTLRSSIVESCKQMATSGTNSRNFLDSVKGAGLKDVCQMDSLRCSTVYPETLLKSGPYQGANNCDDDDMCQIDDKDDLFFNASVKSKSLFSSDDIKSFNPMCEPMDDWPCKFDENLNLGRSRTNISPDQTISKTMQSSEASLKVENDFSFPSEPLGADDDDEVTESKIRDFLDEKALELNKLQTPLYEEFFSISNAAAPPAPVSIAHDEVVSDVSSVTPKSRSPSQASRRFTVFDGPNVARLGSHNKSQSKVSGANIQPLQEIHPSEFNEWKETLHNTQLESFNASSSFSERQRKWKEELVEELQRKREMMRQSGFGGKITSPNDRNFHKQTDRLRFAFPG	813

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa08g0478	813	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	326	338	IPR008271	GO:0004672\|GO:0006468
	Bisa08g0478	813	Pfam	Protein kinase domain	203	464	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa08g0478	813	SMART	serkin_6	202	464	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa08g0478	813	Coils	Coil	242	262	-	-
	Bisa08g0478	813	ProSiteProfiles	Protein kinase domain profile.	202	464	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa08g0478	813	ProSitePatterns	Protein kinases ATP-binding region signature.	208	231	IPR017441	GO:0005524
	Bisa08g0478	813	MobiDBLite	consensus disorder prediction	780	805	-	-
	Bisa08g0478	813	FunFam	Serine/threonine-protein kinase STE11	198	292	-	-
	Bisa08g0478	813	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	181	477	-	-
	Bisa08g0478	813	SUPERFAMILY	Protein kinase-like (PK-like)	201	465	IPR011009	-
	Bisa08g0478	813	Gene3D	Transferase(Phosphotransferase) domain 1	201	499	-	-
	Bisa08g0478	813	FunFam	Mitogen-activated protein kinase kinase kinase 2	201	492	-	-
	Bisa08g0478	813	CDD	STKc_MAPKKK	201	464	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa08g0478	Bisa-ChrBisa08	8057086	8067114	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa08g0478	137	791	MAP Kinase Kinase Kinase	AT3G06030	59.104	0.0	714

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Bisa08g0478		Pkinase	1.6e-72	CL0016