Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g0474 ATGGATGCTCTTTCAGCTCCACAGCTTCTTCCCATTTCCTTTGAGAAGCCAACTCCATCTTCTTTTCTTTCTCGTTCCCAAAACCAAACCTTTAGATCCTTCTCCTTCATTACCCGCACTAACCCTTGTCTTTGCCTCAAATATAGAACTCCACAATCCCTTCTAAATCCTTCTTCCATAACCCACGAAGCAGTTGATAAAGTTAGCTCTCCCACGCTAAGAGAAATATGCGAAGCTCATGTTCCCCAGCATATATTGGACAGGATGGAAGAGATTGGATATTTCATACCTACTGATGTGCAGAGGCAAGCATTGCCGTATCTTTTCTCTAGTCGTGATTGCATTCTTCATGCTCAGACAGGTTCTGGGAAGACACTTACATACCTGCTTCTGATCTATTCCGTAATAAACACCACAAAATCTGCTGTGCAGGCTCTTGTTGTGGTGCCCACCCGTGAACTTGGCATGCAAGTTGCTAAAGTTGCTAGGACCTTGGCAGCAAGGCCAACGGAGGTTGAGGGGGAGCAGAAGTCATGTACCATTATGGCTCTTTTAGATGGAGGAACATTGAGAAGACACAAGAGTTGGCTAAAGGCAGAGCCTCCAACAATAGTGGTAGCAACTGTGGTGAGTTTGTGCCAAATGCTTGAAAGACAACTTTTTAAGCTTGAAACTGTGCGGGTGCTGGTAGTTGATGAGGTTGATTTTGTTTTCAATTCTTCAAAGCAAGTCAGTTCTCTTCGAAAGCTTTTAACTTTGTATTCATCAAGCAATACCCACCATCAAACAGTTTTTGCCAGTGCATCTATACCACAACATAGACGATTTCTACATGATTGTGTGCAGCAGAAATGGACTAAGAGTGACGTGGTCCATATTCATGTTAGTCCAGTAGAGCCCATGCCATCACGCCTATATCATAGATTTATAGTATGTCATAGAAAACAGAAACAACAAGCTCTGTTATCTTTGATAAAATCCGATGCACCAGAGTCTGGCATCATATTTGTCCATGAGCAGTCTGAAAAGTCAAAAAAGGCTGGAAATGCTCCAACAACCACCCTTCTGGTTGACTTTCTGAAAACTTCATATCAAGGTCCTTTAGATATCATCCTTCTTGAAGAAGACGTGAATTTCAATTCGCGAGCAGCGTCACTTCTGGAGGTTAAAAAAGGAGGAGGGTATCTCCTTGTAGCAACAGATATAGCAGCCAGAGGAGTTGACCTTCCAGAAATGTCTCACATATACAACTTTGATCTGCCGAGGACTGCCGTAGATTATCTTCATCGAGCAGGAAGGACATGTAGGAAACCCTTTTCTGATGTGAAATGTACTGTTACCAGTATTATAGTTCCAGAGGAGCGGTTTGTTCTTCAGAAATATGAAAATGAGTTGATGTTCAACTGTGAAGAGCTTACTTCATAA 1425 0.4239 MDALSAPQLLPISFEKPTPSSFLSRSQNQTFRSFSFITRTNPCLCLKYRTPQSLLNPSSITHEAVDKVSSPTLREICEAHVPQHILDRMEEIGYFIPTDVQRQALPYLFSSRDCILHAQTGSGKTLTYLLLIYSVINTTKSAVQALVVVPTRELGMQVAKVARTLAARPTEVEGEQKSCTIMALLDGGTLRRHKSWLKAEPPTIVVATVVSLCQMLERQLFKLETVRVLVVDEVDFVFNSSKQVSSLRKLLTLYSSSNTHHQTVFASASIPQHRRFLHDCVQQKWTKSDVVHIHVSPVEPMPSRLYHRFIVCHRKQKQQALLSLIKSDAPESGIIFVHEQSEKSKKAGNAPTTTLLVDFLKTSYQGPLDIILLEEDVNFNSRAASLLEVKKGGGYLLVATDIAARGVDLPEMSHIYNFDLPRTAVDYLHRAGRTCRKPFSDVKCTVTSIIVPEERFVLQKYENELMFNCEELTS 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g0474 474 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 317 474 IPR001650 -
Bisa08g0474 474 SMART helicmild6 354 438 IPR001650 -
Bisa08g0474 474 Gene3D - 63 286 IPR027417 -
Bisa08g0474 474 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 106 440 IPR027417 -
Bisa08g0474 474 CDD DEADc 85 281 - -
Bisa08g0474 474 SMART ultradead3 93 309 IPR014001 -
Bisa08g0474 474 Pfam Helicase conserved C-terminal domain 317 436 IPR001650 -
Bisa08g0474 474 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 105 288 IPR014001 -
Bisa08g0474 474 CDD SF2_C_DEAD 307 436 - -
Bisa08g0474 474 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 73 465 - -
Bisa08g0474 474 Pfam DEAD/DEAH box helicase 98 272 IPR011545 GO:0003676|GO:0005524
Bisa08g0474 474 Gene3D - 302 472 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g0474 Bisa-ChrBisa08 8035437 8041643 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g0474 83 457 Eukaryotic Initiation Factors Gene Family AT3G13920 25.000 3.62e-24 102