Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g0473 ATGGATAATTTCACCTCTTCTTCTTCTTGTCCTCCTCCGCCTCTATCTGACATGCTACCCACTTCAGCTCCATTGTCTTCTGGGGCTTTCGACGACGGTTCCGAGGACTCCTGCAGTATATGTCTAGAGCCCTTCAGCACCGATGACCCAGCCACTATAACCAGTTGCAAGCATGAATATCATCTGCATTGTATTCTTGAATGGTCTCAGAGAAGCAAAGAGTGCCCAATATGTTGGCAGTTGCTTATTTTGAAAGACCCTGCCAATCAAGAACTTCTCATTGCAGTGGAGGCTGAAAAACGCTTAAGATCAAGAAGCTCATATTCATCTGCATTTCCTCATTCTCGCATTCCCTTCGAACGGCTTAATGCCGAACATGATGATTCGTGTTCAGACGACTCTGAGTTTGATGAACAAATTATGCAGCACCTAGTTGCTGCTGCTAGTAGAGCTCGATACATTCGCAGAAGGGAAAGGCAAAGATCATCTGGAGCAGGTCCATCAGAGGTTCCTGTTTTCAACTCTTTTGTCCAAGTGTCTGGGCCGCAAGCAGTGCTTACAACTTCACCCTCTGGAGGTAGTTCACCAACTTCTGGTATTTCACCAGCTGCTGACATTCAATCTTCACCATCTTCTCTGTCCCCTGTTGATGTGGTTGCAAGAAATCCTACTCCTGAAAGTGGTGTCCCTTTCAGAGCCAGGGTTCTTCATAGCCAGCCACCACCTGAGAACGTGAGAAGACTGAACACTTCTGAGATGTTCACCTTCCCTGAGTCCATCAAATCCAAATTTTCTGCTGCTTCGGCCAGATATAAGGAATCTATTTCTAAAAGTACACGTGGCCTTAAAGAGAAGCTACTTGCTCGTAATGCTTCAGTAAAAGAGCTGAGCAAAGGTGTTCAGCGTGAGATGAATGCTGGCATTGCTGGTGTTGCACGAATGATTGAACGCCTTGATCTTGCCTCAAAACGTGCCACTGCCTCTCCTCCCATGCCCAGCTTTACAGGGGGAACCTCTGGCTTCCCTTTGAAAGGGAAGACTGTCGAAGAAAATGGTAGTGGACAGTTTCCTCACTGTCCTGTTCAAGAAAGTGGCGTTGAGCAGCCTCTTATAAAAGAGAGTGGAGCCGCAATTCATGATGTTCATTCGGATGCAGCCTCACAGGTTTCCAGCACTCCACTAGAAGTTCCTCATCCATGCATTCAGAGTGGACATGATGCACTAAAGACCTAG 1233 0.4688 MDNFTSSSSCPPPPLSDMLPTSAPLSSGAFDDGSEDSCSICLEPFSTDDPATITSCKHEYHLHCILEWSQRSKECPICWQLLILKDPANQELLIAVEAEKRLRSRSSYSSAFPHSRIPFERLNAEHDDSCSDDSEFDEQIMQHLVAAASRARYIRRRERQRSSGAGPSEVPVFNSFVQVSGPQAVLTTSPSGGSSPTSGISPAADIQSSPSSLSPVDVVARNPTPESGVPFRARVLHSQPPPENVRRLNTSEMFTFPESIKSKFSAASARYKESISKSTRGLKEKLLARNASVKELSKGVQREMNAGIAGVARMIERLDLASKRATASPPMPSFTGGTSGFPLKGKTVEENGSGQFPHCPVQESGVEQPLIKESGAAIHDVHSDAASQVSSTPLEVPHPCIQSGHDALKT 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g0473 410 SUPERFAMILY RING/U-box 32 85 - -
Bisa08g0473 410 ProSiteProfiles Zinc finger RING-type profile. 38 78 IPR001841 -
Bisa08g0473 410 SMART ring_2 38 78 IPR001841 -
Bisa08g0473 410 Pfam Ring finger domain 36 78 IPR001841 -
Bisa08g0473 410 MobiDBLite consensus disorder prediction 184 215 - -
Bisa08g0473 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 92 IPR013083 -
Bisa08g0473 410 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 10 87 - -
Bisa08g0473 410 MobiDBLite consensus disorder prediction 346 365 - -
Bisa08g0473 410 MobiDBLite consensus disorder prediction 1 30 - -
Bisa08g0473 410 FunFam E3 ubiquitin-protein ligase RHF1A 23 90 - -
Bisa08g0473 410 MobiDBLite consensus disorder prediction 371 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g0473 Bisa-ChrBisa08 8031112 8034171 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g0473 32 89 C3H Transcription Factor Family AT4G00335 44.828 2.94e-13 66.2