Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g0380 ATGGCGAGATACCGAAGCCGGAGCAGAAGCTATAGCCCTCGCCGCCGAAGCAGAACCCCACCACGTGGACGTAAGCGGCACGATGATGACCCTCGGGATCGTATCCGTGACAGCAGGTCTCACAGAAACCGCCGCTCCCCTGCTCCTTCCGGCTTGCTTGTTCGTAATCTTCCCCTTGATGCTAGGCCTGAAGATCTCAGGGGCCCATTTGAGCGCTATGGTCCTGTGAAAGATGTTTATCTTCCTAAGAATTACTACACTGGTGAGCCTCGGGGCTTTGGATTTGTAAAATTTCGATATGCTGAAGATGCAGCTGAAGCAAAGCACCAACTGAATCACACTGTTATTGGTGGACGTGAAATAAGAATTGTGTATGCTGAGGAAAATAGGAAAACACCTCAAGAAATGCGGATTAATACTCGCATAAGTGGTCGATATGGAGGAAGTGGTAGAAGGAGAACTCCCACAAGATCCCCAAGGCGCCGAAATCGTTCTTACTCAAGGTCTCTATCACCAGCCAAGGATGATTCAAGGGATCACAGGGGCAGGGATGATTATTATTCTCCTGAGCGATCAAGATCTTATTCTAGGTCTCCTTCACCTCGTGGTGGAAAGGATTTCAGAAGGTCCCCAAGTCCAAAGGAGAAGGGTCGGAATCCTGATGACAGGAGGGACCATACACATAGCAGGTCAGAGAGTCCTAGGGGTAATGCTCACAGTCCATCAAGGTCTCGATCACGGTCCTACAGTCCTCGTTGA 759 0.4993 MARYRSRSRSYSPRRRSRTPPRGRKRHDDDPRDRIRDSRSHRNRRSPAPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKHQLNHTVIGGREIRIVYAEENRKTPQEMRINTRISGRYGGSGRRRTPTRSPRRRNRSYSRSLSPAKDDSRDHRGRDDYYSPERSRSYSRSPSPRGGKDFRRSPSPKEKGRNPDDRRDHTHSRSESPRGNAHSPSRSRSRSYSPR 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g0380 252 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 128 IPR000504 GO:0003723
Bisa08g0380 252 MobiDBLite consensus disorder prediction 1 22 - -
Bisa08g0380 252 MobiDBLite consensus disorder prediction 202 233 - -
Bisa08g0380 252 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 46 244 - -
Bisa08g0380 252 SMART rrm2_1 51 124 IPR003954 GO:0003676
Bisa08g0380 252 SMART rrm1_1 51 124 IPR000504 GO:0003723
Bisa08g0380 252 SUPERFAMILY RNA-binding domain, RBD 46 154 IPR035979 GO:0003676
Bisa08g0380 252 FunFam Serine/arginine-rich SC35-like splicing factor SCL28 2 142 - -
Bisa08g0380 252 ProSitePatterns Protamine P1 signature. 2 12 IPR000221 GO:0000786|GO:0003677|GO:0005634|GO:0007283|GO:0035092
Bisa08g0380 252 MobiDBLite consensus disorder prediction 168 191 - -
Bisa08g0380 252 MobiDBLite consensus disorder prediction 23 44 - -
Bisa08g0380 252 MobiDBLite consensus disorder prediction 1 68 - -
Bisa08g0380 252 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 122 IPR000504 GO:0003723
Bisa08g0380 252 Gene3D - 2 139 IPR012677 -
Bisa08g0380 252 MobiDBLite consensus disorder prediction 234 252 - -
Bisa08g0380 252 MobiDBLite consensus disorder prediction 132 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g0380 Bisa-ChrBisa08 6610796 6615316 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g0380 54 112 Eukaryotic Initiation Factors Gene Family AT3G11400 45.763 2.04e-07 49.3