Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g0374 ATGTATCTTTGTTGGATTCTTCTTTCAATACACCATTTTTTTTTCGCCCTTTTTTCTTATCCTCTCCCTTCTGGGTTTTCCTCGTATCACAACATTCCGTTTTCTTTCCCATTTCACACTTTTGGACCTTTCAAGCTAACAATAATGCAAGCAGCTCAAGGTCAAGCAGCCACTGATGAACCTTCTGATAGTTCGCAGAAGACTGATCTCCATTTAAACAAAGAAGTTTCGAATAATGGACCTAGTGGGAGGCGTCCGGATATTTCACTTCAAATCCCACCTAGACATGGAAGGGTTCTGGACCATTCTAAAAGTTTCTCTAAAGTCATTCCATCACCAGGAGGCTTTTTGCGGGCTTTGAGCCTCAAAAGGAAAGGCAATACAGCAGATGCTGAAAGGAGCAGCCTCCTCAATTCAGATCCCAAGACAGCTCCGGACAGTCCTAATATGGCCAACTTTACATCTGCAATGCCATGGCAAAGATGTACTTCCCTTCCTGTTACACCTGCAACGAATCTGTCACCTTCAGTTTCTACACCTTCTTCTGCAAGGACATACGGTGAACGGCCAAAGATACATAAAGAGGTTGATCGTTCCAAGGTTTCAAGGTCCCTCTCTGTACCTGGACGGAATATTGTTATTGTAAGATCTGTGTCTTTTGCTGCCCGCAGTGAGCATGCACAAGAAGATCAGAATGATGATCAAATAACTCCTGTGCCGGTAGAAACTTCTGATGAAGAAATTCCTGAAGAGGAAGCAGTGTGCAGGATCTGTTATGATGTCTGTGATGAAGGGAACACACTCAAATTGGAATGCAGTTGTAAAGGTGACCTGACACTGGTGCATGAACAATGTGCAATTAAATGGTTTAGCACAAAAGGAAATAAGAAATGCGATGTCTGTGGTCAGGAAGTTCAGAATTTACCTGTAACTTTGCTTCGTTTACCAAGCTCTGCTCAAACGGGAAGAAGACAGGTGCAGGGTCAGCAGAACTTGCATTCAGAGTCAATAAGTGCCTGGCAAGACTTTGTGGTGCTTGTCTTAATAAGCACGATATGCTATTTTTTCTTCCTCGAGCAGCTACTGCTCCCTGACATGAAGACTCAAGCAATAATTATAGCCGCACCATTTGCCTTTACCTTGGGTCTCCTGGCATCTATTTTTGCAGTCATACTCGCAATAAAAGAGTATATATGGACATATGCTGCTCTCGAGTTTGCTCTTATTGCTATAACTGTACACCTGTTCTATACTATGTTGCATTTGAAGGCCATATACGCAATATTACTTTCATCAGTTTTGGGATTTGGTATATCCATGAGTATCAACTATGTATATATCCAGTATGTTTCTTGGCGCCTTCAGGTCTCCCATAATGCTAACCCAGTATGA 1392 0.4239 MYLCWILLSIHHFFFALFSYPLPSGFSSYHNIPFSFPFHTFGPFKLTIMQAAQGQAATDEPSDSSQKTDLHLNKEVSNNGPSGRRPDISLQIPPRHGRVLDHSKSFSKVIPSPGGFLRALSLKRKGNTADAERSSLLNSDPKTAPDSPNMANFTSAMPWQRCTSLPVTPATNLSPSVSTPSSARTYGERPKIHKEVDRSKVSRSLSVPGRNIVIVRSVSFAARSEHAQEDQNDDQITPVPVETSDEEIPEEEAVCRICYDVCDEGNTLKLECSCKGDLTLVHEQCAIKWFSTKGNKKCDVCGQEVQNLPVTLLRLPSSAQTGRRQVQGQQNLHSESISAWQDFVVLVLISTICYFFFLEQLLLPDMKTQAIIIAAPFAFTLGLLASIFAVILAIKEYIWTYAALEFALIAITVHLFYTMLHLKAIYAILLSSVLGFGISMSINYVYIQYVSWRLQVSHNANPV 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g0374 463 SUPERFAMILY RING/U-box 251 305 - -
Bisa08g0374 463 MobiDBLite consensus disorder prediction 52 92 - -
Bisa08g0374 463 Pfam RING-variant domain 255 301 IPR011016 GO:0008270
Bisa08g0374 463 CDD RING_CH-C4HC3_MARCH 255 302 - -
Bisa08g0374 463 MobiDBLite consensus disorder prediction 128 147 - -
Bisa08g0374 463 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 309 IPR013083 -
Bisa08g0374 463 MobiDBLite consensus disorder prediction 224 245 - -
Bisa08g0374 463 MobiDBLite consensus disorder prediction 170 200 - -
Bisa08g0374 463 PANTHER OS02G0165000 PROTEIN 81 459 - -
Bisa08g0374 463 MobiDBLite consensus disorder prediction 170 185 - -
Bisa08g0374 463 MobiDBLite consensus disorder prediction 71 85 - -
Bisa08g0374 463 ProSiteProfiles Zinc finger RING-CH-type profile. 247 308 IPR011016 GO:0008270
Bisa08g0374 463 SMART ringv_2 254 302 IPR011016 GO:0008270
Bisa08g0374 463 MobiDBLite consensus disorder prediction 131 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g0374 Bisa-ChrBisa08 6538367 6544223 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g0374 265 363 C3H Transcription Factor Family AT5G59000 33.333 7.64e-12 63.2