Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g0358 ATGGCGCAGAGCAATTGGGAAGCAGATAAGATGCTTGATGTTTATATCTATGATTATTTGGTGAAGAAAAAATTGCATAATACCGCCAAGTCATTCATGACAGAAGGGAAGGTTGCTCCAGATCCAGTAGCAATTGATGCTCCTGGGGGGTTTCTTTTTGAGTGGTGGTCTGTCTTCTGGGATATTTTCATTGCAAGGACGAACGAGAAACATTCTGAGTCTGCTGCGGGATATTTAGAGGCTCAACAGCTTAAAGCAAAAGAACAGCAGCAGCTGCAAATGCAGCAGTTGCAATTAATGCGTCAAGCTCAGCTTCAAAGAAGGGATCCTAATCACCCTCCTCTTAGTGGAAATGTAAGTGCTATCACTTCAGAAGGAATGCTTGGGCAGCCTACTGCTAGTGCGTTGGCTGCAAAAATGTATGAGGAACGAATGAAACACTCTAACCCAATGGATACAGAGACATCTCAACCACTTCTAGATGCTAGAATGGCCCTATTGAAGTCGACAACAAATCACCCTGGTCAAATGGTTCAAGGAAATACCGGAGGTGTGACAGCAGCTTTGCAACACATGCAAGCACGAAATCAACAAACACCTCAGGACATTAAAAGTGAAGTTAACATGGGTACGATGCAGAGATCATTGCCCATGGATCCTTCTTCAATGTATGGGCAGGGAGCAATGCAATCAAAGCCTGGAATTGTAAATGCAGGATTGAATCCGGGTGTTGGTGGTCTCACATTGAAAGGATGGCCCTTAACTGGTATAGATCAAATTCGACCAGGTTTAGGAGGACAAGTTCAAAAGCCTCTTCTTCAGAGTGCAAATCAGTTTCAGCTTTTGCCACAACAACAACAACAACTCCTGGCACAGGTTCAGGCACAAGGAAACATTGGCAGTTCACCTATGTATGCAGATATGGATCCTCAACGATTAAGGGGATTAGCTAGGGGTAGTTTGAATGCGAAAGATGGTCAACCAATTGCAAATGATGGATCAATTGGTTCTCCATTGCAATCCACTTCATCTAAGATCAACATGCCACAGATACAACAATCTAGCTCTCAGCAACAACAGGATCCTTTGCATCCACAGCAACTGCAACAGAATAATCGGAAAAGGAAAGGGCCTACATCCTCAGGAGCTGCCAACAGTACTGGTACAGGAAACACAATTGGCCCATCTAATTCTCAACCATCGACCCCATCTACTCATACTCCTTGTGATGGAGTAGCAATGGCTGGTAACTTGCAGAATGTTGGTGGTGTATCCAAAGGTTTGATGATGTATGGTGCTGATGGCACTGGTGGTCTTGCGTCCTCCACAAATCAGCTGTTGCAGGATGACATGGAACGTTTTGGAGATGTTGGCTCATTAGATGATAATGTGGAGTCATTTCTCTCACATGATGATGGTGATGGAAGGGACTTGTTTGGCAGCTTAAAACGGAACACTTCTGAGCATGCAACAGATGCTTCAAAAGGCTTTTCCTTCAGCGAAGTTGGCTCCATACGCAAAAGCAATGGCAAAGTTGTTTGCTGTCATTTCTCTTCAGATGGGAAGTTATTGGCCAGTGCAGGACACGACAAGAAGGTTTTTCTGTGGAACATGGAGACACTACAAACAGATAGCACTCCAGAGGAACACACTCTTATTATTACTGATGTCCGCTTCAGACCAAATTCAACTCAGTTTGCAACCTCTTCATTTGATACAACTGTGCGACTTTGGGATGCTTCAGATCCAAACAGCTTTTGTTTACAGAAATATGTTGGTCATAAATCTCATGTGATGTCCCTTGACTTCCACCCAAAGAAAAATGACCTTTTCTGTTCTTGTGATGCGAACAGTGAGATTCACTTTTGGACCATTAATCAATATCCTGCCACTCGTGTTTCCAAGGGAGGATCTGCACAGGTAAGGTTTCAGCCAAGGATAGGACACTTTCTGGCTGCTGCAGCTGGCAATGTTGTGTCACTCTATGATGTTGAGACTGATAGGCTGGTGCAGTCATTAGAGGGACACCCTTCAGATGTGCATTCTGTTTGTTGGGATACCAATGGAGATTACTTGGCATCTGTGAGTCAAGAATCTGTCAGAGTGTGGTCATTGGCCTCCGGGGAGTGCATTCATGAGCTTAGTTCCAGTGGGAACTTGTTCCATTCTTGTGTTTTTCACCCAAGCTACTCCACTCTCTTGGTTATTGGAGGTTACCAGTCATTGGAGCTATGGAACATGGCGGAGAATAAGTGTATGACAATAGCAGCTCATGAGTGTGTGATCTCGGCTCTAGCACGGTCACCTGTGTCAGGGATGGTTGCTTCTGCCAGTCATGACAAATCCGTCAAGATTTGGAAATGA 2364 0.445 MAQSNWEADKMLDVYIYDYLVKKKLHNTAKSFMTEGKVAPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAAGYLEAQQLKAKEQQQLQMQQLQLMRQAQLQRRDPNHPPLSGNVSAITSEGMLGQPTASALAAKMYEERMKHSNPMDTETSQPLLDARMALLKSTTNHPGQMVQGNTGGVTAALQHMQARNQQTPQDIKSEVNMGTMQRSLPMDPSSMYGQGAMQSKPGIVNAGLNPGVGGLTLKGWPLTGIDQIRPGLGGQVQKPLLQSANQFQLLPQQQQQLLAQVQAQGNIGSSPMYADMDPQRLRGLARGSLNAKDGQPIANDGSIGSPLQSTSSKINMPQIQQSSSQQQQDPLHPQQLQQNNRKRKGPTSSGAANSTGTGNTIGPSNSQPSTPSTHTPCDGVAMAGNLQNVGGVSKGLMMYGADGTGGLASSTNQLLQDDMERFGDVGSLDDNVESFLSHDDGDGRDLFGSLKRNTSEHATDASKGFSFSEVGSIRKSNGKVVCCHFSSDGKLLASAGHDKKVFLWNMETLQTDSTPEEHTLIITDVRFRPNSTQFATSSFDTTVRLWDASDPNSFCLQKYVGHKSHVMSLDFHPKKNDLFCSCDANSEIHFWTINQYPATRVSKGGSAQVRFQPRIGHFLAAAAGNVVSLYDVETDRLVQSLEGHPSDVHSVCWDTNGDYLASVSQESVRVWSLASGECIHELSSSGNLFHSCVFHPSYSTLLVIGGYQSLELWNMAENKCMTIAAHECVISALARSPVSGMVASASHDKSVKIWK 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g0358 787 ProSiteProfiles Trp-Asp (WD) repeats profile. 673 713 IPR001680 GO:0005515
Bisa08g0358 787 Gene3D - 484 637 IPR015943 GO:0005515
Bisa08g0358 787 Gene3D - 638 787 IPR015943 GO:0005515
Bisa08g0358 787 ProSitePatterns Trp-Asp (WD) repeats signature. 524 538 IPR019775 -
Bisa08g0358 787 SUPERFAMILY WD40 repeat-like 499 787 IPR036322 GO:0005515
Bisa08g0358 787 ProSiteProfiles Trp-Asp (WD) repeats profile. 505 546 IPR001680 GO:0005515
Bisa08g0358 787 Pfam WD domain, G-beta repeat 510 537 IPR001680 GO:0005515
Bisa08g0358 787 Pfam WD domain, G-beta repeat 587 623 IPR001680 GO:0005515
Bisa08g0358 787 Pfam WD domain, G-beta repeat 547 579 IPR001680 GO:0005515
Bisa08g0358 787 Pfam WD domain, G-beta repeat 669 704 IPR001680 GO:0005515
Bisa08g0358 787 Pfam WD domain, G-beta repeat 754 787 IPR001680 GO:0005515
Bisa08g0358 787 PRINTS G protein beta WD-40 repeat signature 524 538 IPR020472 -
Bisa08g0358 787 PRINTS G protein beta WD-40 repeat signature 774 787 IPR020472 -
Bisa08g0358 787 PRINTS G protein beta WD-40 repeat signature 566 580 IPR020472 -
Bisa08g0358 787 ProSiteProfiles Trp-Asp (WD) repeats profile. 591 633 IPR001680 GO:0005515
Bisa08g0358 787 SMART Lish 8 40 IPR006594 GO:0005515
Bisa08g0358 787 Coils Coil 87 107 - -
Bisa08g0358 787 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 755 787 - -
Bisa08g0358 787 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 787 IPR044716 GO:0003714
Bisa08g0358 787 CDD WD40 501 787 - -
Bisa08g0358 787 ProSiteProfiles Trp-Asp (WD) repeats profile. 755 787 IPR001680 GO:0005515
Bisa08g0358 787 MobiDBLite consensus disorder prediction 333 408 - -
Bisa08g0358 787 MobiDBLite consensus disorder prediction 321 413 - -
Bisa08g0358 787 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 547 579 - -
Bisa08g0358 787 ProSiteProfiles Trp-Asp (WD) repeats profile. 547 579 IPR001680 GO:0005515
Bisa08g0358 787 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Bisa08g0358 787 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 505 540 - -
Bisa08g0358 787 SMART WD40_4 540 579 IPR001680 GO:0005515
Bisa08g0358 787 SMART WD40_4 498 537 IPR001680 GO:0005515
Bisa08g0358 787 SMART WD40_4 748 787 IPR001680 GO:0005515
Bisa08g0358 787 SMART WD40_4 666 704 IPR001680 GO:0005515
Bisa08g0358 787 SMART WD40_4 707 746 IPR001680 GO:0005515
Bisa08g0358 787 SMART WD40_4 584 624 IPR001680 GO:0005515
Bisa08g0358 787 Pfam LisH 10 36 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g0358 Bisa-ChrBisa08 6278922 6290433 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g0358 585 786 Miscellaneous Gene Families AT5G08390 25.604 2.01e-15 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Bisa08g0358 WD40 0.014 CL0186