Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g0350 ATGATCAGAGAGCCTATTGGACCAAACAAAACCAAGGCAAGCTTGAGAAAGATTTTCCACTTGGTTTCCTCATCAGATGACCGAGAGAGAAGCATATGTGAGAAAGCTTTGGGTGTGTTGGATTGTCTCTGTGATTGTAAAGAAAGGAAGGAAATGGCCATGGCTAATGCTATGACCTTGCCTCTTGCAATCAAGAAGATTCTGAGGGAAAGGACGCATATACCCTTTTGGTTTCCCCTTTTTTATGCTCTGTTTTCGTGTGTCTCGCTGCCCTACTTCTTGTGTCGAGCTCTAGCCCGAGCTTCCGCCACCATCTCCGTCGCTTCTGCCTCGTTACACAGTTCGTCCATGGCGGCTTTGTTCCGCAGCCACGTTCCGTCTCCCACATCCACCTCTGTTCCCTCTCGTGACTCCAAGCACCACCCATCCCGCAGCCAGAGTCTTCTCCACTTTACTCGAATCTTAAACCCCGCATTCCCTTCTTATTACTCCCTCCAGTCTACCAACACCAAGTTGAAGACCTTTGTTTCTAAATCTGCTGCAGTTTCCTGTTCGCAATCGCAGGACTCGGCTCCCTCTCGCCGCCGTCCTGAATACATTCCCAATCATATTCCCGATCCCAACTATGTCCGAATCTTCGACACCACCCTTCGTGACGGCGAGCAGTCCCCTGGAGCTTCTATGACATCGAAGGAGAAGCTCGACATTGCTCGCCAGCTCGCCAAGCTTGGCGTCGACATAATTGAGGCGGGCTTTCCTGCTGCATCGAAGGCTGACTTCGAGGCTGTCAAATTGATAGCCAAAGAGGTCGGAAACGTGGTTGACGAAGAGGGATACGTGCCTGTCATTTGTGGGTTATCCAGGTGTAATGAGAAGGATATTAGTGCTGCTTGGGAGGCTGTGAAGTATGCCAAAAGGCCAAGAATTCATACCTTCATAGCAACCAGTAACATTCACATGGAGTATAAATTAAAAAAGACTAAAGAGCAGGTACTAGAGATTGCCCGGAATATGGTGAAGTTTGCCCGAAGTTTAGGCTGCGACGACGTGGAGTTCAGTCCCGAAGATGCTGGGAGATCGGACAGGGAGTTTCTTTATCAAATTTTAGGAGAAGTCATCAAGGCTGGCGCAACGACATTGAACATACCTGACACTGTTGGTATAACCATGCCTAGCGAGTTTGGAAGATTGATTGCTGACATAAAAGCCAATACCCCAGGAATTGAAAATGTTATCATTTCAACCCACTGTCAAAATGATCTTGGACTCTCCACTGCTAACACCATAGAGGGTGCACGCGCTGGTGCAAGGCAATTGGAAGTAACAATTAATGGGATTGGTGAAAGGGCTGGCAATGCATCATTAGAAGAGGTTGTGATGGCTCTGAAATGTGGTAAAGATCATGTCTTTGGCGGTCTTTATACGGGAATTAATACACGTCACATCTTTTTGACAAGCAAAATGGTCGAAGAATACAGTGGTTTGCATATACAACCACACAAGGCTCTCGTAGGAGTTAATGCTTTTGCTCATGAAAGTGGCATTCACCAGGATGGAATGCTAAAACACAAAGGTACATATGAAATAATATCTCCAGAGGATATTGGTTTGGAAAGATCCAATGAAGCTGGTATTGTTTTGGGGAAGCTTAGTGGGCGCCATGCTCTGAGAAAACAACTTGAAGAGCTTGGTTATGACCTCAAAGATGAGCAACTTGAGGCTATGTTTTGGCGTTTCAAAGCAGTGGCTGAGCAAAAAAAGAGAGTCACTGAGGCTGACCTAAGAGCATTAGTATCAGACGAAGTTTTTCAGGCAGAACCTATCTGGAAGTTTGATGCTTTGCAGGTGACTTGTGGAGCTCCTGGTCTGTCGACAGCAACTGTCAAACTTATTGACACTGATGGTAAATCGCACGTTGCTTGTTCTGTTGGTACAGGGCCAGTAGATTCAGCTTACAAGGCTGTCGATCTTATTGTAAAGGAACCAGCAGCACTTCTGGAGTACTCACTCAATGCAGTCACAGAAGGCATAGATGCAATTGCCACTACCCGTGTTGTAATTCGAGGGAAAACAAGTCATACATCTACTTTAACAGGAGAAACAGTTTATAGAACATTTGGTGGCAGTGGGGCTAGCATGGACATTGTTGTATCCAGTGTCAAGGCTTATGTTGCTGCCCTGAACAAGATGTTGAGTTTCAGAGAAACATCTATACCTGCTGAAAAATCTACGGTTTCTGTATGA 2244 0.4603 MIREPIGPNKTKASLRKIFHLVSSSDDRERSICEKALGVLDCLCDCKERKEMAMANAMTLPLAIKKILRERTHIPFWFPLFYALFSCVSLPYFLCRALARASATISVASASLHSSSMAALFRSHVPSPTSTSVPSRDSKHHPSRSQSLLHFTRILNPAFPSYYSLQSTNTKLKTFVSKSAAVSCSQSQDSAPSRRRPEYIPNHIPDPNYVRIFDTTLRDGEQSPGASMTSKEKLDIARQLAKLGVDIIEAGFPAASKADFEAVKLIAKEVGNVVDEEGYVPVICGLSRCNEKDISAAWEAVKYAKRPRIHTFIATSNIHMEYKLKKTKEQVLEIARNMVKFARSLGCDDVEFSPEDAGRSDREFLYQILGEVIKAGATTLNIPDTVGITMPSEFGRLIADIKANTPGIENVIISTHCQNDLGLSTANTIEGARAGARQLEVTINGIGERAGNASLEEVVMALKCGKDHVFGGLYTGINTRHIFLTSKMVEEYSGLHIQPHKALVGVNAFAHESGIHQDGMLKHKGTYEIISPEDIGLERSNEAGIVLGKLSGRHALRKQLEELGYDLKDEQLEAMFWRFKAVAEQKKRVTEADLRALVSDEVFQAEPIWKFDALQVTCGAPGLSTATVKLIDTDGKSHVACSVGTGPVDSAYKAVDLIVKEPAALLEYSLNAVTEGIDAIATTRVVIRGKTSHTSTLTGETVYRTFGGSGASMDIVVSSVKAYVAALNKMLSFRETSIPAEKSTVSV 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g0350 747 SMART LeuA_dimer_2 588 731 IPR013709 GO:0003852|GO:0009098
Bisa08g0350 747 SUPERFAMILY Aldolase 206 505 - -
Bisa08g0350 747 Gene3D - 496 612 - -
Bisa08g0350 747 Gene3D Aldolase class I 206 495 IPR013785 -
Bisa08g0350 747 PANTHER HOMOCITRATE SYNTHASE-RELATED 198 733 - -
Bisa08g0350 747 FunFam 2-isopropylmalate synthase 205 495 - -
Bisa08g0350 747 FunFam 2-isopropylmalate synthase B 613 731 - -
Bisa08g0350 747 NCBIfam 2-isopropylmalate synthase 210 728 IPR005671 GO:0003852|GO:0009098
Bisa08g0350 747 FunFam 2-isopropylmalate synthase 1 chloroplastic 496 609 - -
Bisa08g0350 747 Gene3D - 614 731 IPR036230 -
Bisa08g0350 747 SUPERFAMILY 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 617 730 IPR036230 -
Bisa08g0350 747 ProSitePatterns Alpha-isopropylmalate and homocitrate synthases signature 1. 217 233 IPR002034 GO:0019752|GO:0046912
Bisa08g0350 747 ProSiteProfiles Pyruvate carboxyltransferase domain. 210 483 IPR000891 GO:0003824
Bisa08g0350 747 CDD DRE_TIM_IPMS 212 491 - -
Bisa08g0350 747 Pfam HMGL-like 210 489 IPR000891 GO:0003824
Bisa08g0350 747 Hamap 2-isopropylmalate synthase [leuA]. 207 740 IPR005671 GO:0003852|GO:0009098
Bisa08g0350 747 Pfam LeuA allosteric (dimerisation) domain 589 731 IPR013709 GO:0003852|GO:0009098
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g0350 Bisa-ChrBisa08 6100112 6111074 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g0350 27 69 U-box Gene Family AT1G66160 46.512 6.57e-06 47.4