Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g0327 ATGAGTAATTATAGATGCTTGGCCGTTAAAAGACCTTTGTCCTTTCCTTGAGATGGAAACTCCACATGGGTGGTTTCTCCTTCTGGGGATTTTGCCTTTGGGTTTCAACACCTGGAAGATAATGATGATTCGTTCTTGCTTTCCATATGGTATGCTAAGATTCCAAACAAAACCATTGTATGGTATCCCGATAAAGGCAATCCTGCTCCAAGGGGGTCAACAGTACAACTTACTGCTGAAGGAGGGCTAGTGCTTACTCCTCCTGGTAGTGGGTATCTGTGGAAAACAGATGATCTTGATGGTACTGTTGCTCTTGGTGCCTTGGATGACTTTGGCAACTTTGTTCTTCAGGACAGCACCTCCAAATCTGTTTGGGAGACCTTCAAGTATCCTAGTGACACCCTGTTGCCCTCGCAGTGTCTGGAAAAGGGAGATCTGCTTTCTTCTCGAAGGTCAGAGATGGACTTCTCGCAGGGAAGTGGTACTGTTGAGTCCAAAAGATCAAGTCCTGGCCTTCAACTGGTCTTCAACAAATCAGGAGACATGTATATTTTGAGAAAGAACAATAGCACATACAAACTCTCAAACAGGGCAGCTGCCTCTACTACTCAATTTTATCTCCGAGCTACTCTTAATTCTGATGGAGTTTTCACTTTCTATCAACATCCAAAGACCTCCTTTGGCAATGAAACTTGGAGCTCTCTCTGGTCTCTGCCGGATAATATCTGTAATGCCAGCCTTGTTACTACAGGTAGCGGCGTTTGTGGATATAATAGCATCTGCTATTTGGCTGATAACAAGAGGCCAATTTGCCAATGCCCAAAAGGCTATTCTCTACTTGATCCTAAAGACCCATATGGTAGCTGTAAACCAGATTTCATTCAGGGATGTAAAGAAGATGAGCTTAGTCAAGGGAAAGATCTATATGAGTTTGAGGTGTTAGTAAACGTTGATTGGCCTTCGACTGATTCTGAGCTTGAAAATCCTTTTACTGAAAAAATTTGTGCAGAGTCTTGTATGGAAGATTGCCTTTGTGCTGTTGCAATTTTCGAATCAGATGGCAGCTGCTGGAAGAAGAAGTTGCCACTTTCAAATGGCAGATTTGACGCACGTCTAAATGGTGGTAAGGCTTTTATCAAAGTGAGGAAAGACAATTCCTTTTTAGTTGGTCCTCCAATCATCAAGAAAAAGAACCAGAAAACTTTGACTCTGGAGCTTGAAGAAGCTACAAATGGGTTCAAGGAAGAGTTAGGAAGGGGAGCTTTTGGTGTTGTTTATAAAGGAATCATACACATGGGCTCTGCAATTCATGTTGCGGTAAAAAAATTGAACAACTTTCATTTACAAGAAATTGAGAAGGAATTCAAGAATGAAGTGAATGTGATTGGTCAGACCCATCATAAGAATTTGGTTCGTTTGCTTGGTTTCTGTGAGGAGGGAGCAGAAAGGTTATTGGACCCAACTCTTAGGCCCACCATGAGGAAGGTTGCTCAGATGCTTGAAGGTGTTCTTGAAGTGCTCGATCCACAATATTCCTGA 1539 0.4237 MSNYRCLAVKRPLSFPXDGNSTWVVSPSGDFAFGFQHLEDNDDSFLLSIWYAKIPNKTIVWYPDKGNPAPRGSTVQLTAEGGLVLTPPGSGYLWKTDDLDGTVALGALDDFGNFVLQDSTSKSVWETFKYPSDTLLPSQCLEKGDLLSSRRSEMDFSQGSGTVESKRSSPGLQLVFNKSGDMYILRKNNSTYKLSNRAAASTTQFYLRATLNSDGVFTFYQHPKTSFGNETWSSLWSLPDNICNASLVTTGSGVCGYNSICYLADNKRPICQCPKGYSLLDPKDPYGSCKPDFIQGCKEDELSQGKDLYEFEVLVNVDWPSTDSELENPFTEKICAESCMEDCLCAVAIFESDGSCWKKKLPLSNGRFDARLNGGKAFIKVRKDNSFLVGPPIIKKKNQKTLTLELEEATNGFKEELGRGAFGVVYKGIIHMGSAIHVAVKKLNNFHLQEIEKEFKNEVNVIGQTHHKNLVRLLGFCEEGAERLLDPTLRPTMRKVAQMLEGVLEVLDPQYS 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g0327 512 SUPERFAMILY alpha-D-mannose-specific plant lectins 45 134 IPR036426 -
Bisa08g0327 512 Gene3D - 130 233 IPR036426 -
Bisa08g0327 512 ProSiteProfiles Protein kinase domain profile. 411 512 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa08g0327 512 ProSitePatterns Protein kinases ATP-binding region signature. 417 442 IPR017441 GO:0005524
Bisa08g0327 512 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 18 485 - -
Bisa08g0327 512 SMART blect_4 14 131 IPR001480 -
Bisa08g0327 512 FunFam S-receptor-like serine/threonine-protein kinase 391 486 - -
Bisa08g0327 512 Gene3D Phosphorylase Kinase; domain 1 377 485 - -
Bisa08g0327 512 Pfam S-locus glycoprotein domain 187 278 IPR000858 GO:0048544
Bisa08g0327 512 ProSiteProfiles Bulb-type lectin domain profile. 10 129 IPR001480 -
Bisa08g0327 512 Pfam D-mannose binding lectin 58 141 IPR001480 -
Bisa08g0327 512 Pfam Protein tyrosine and serine/threonine kinase 413 482 IPR001245 GO:0004672|GO:0006468
Bisa08g0327 512 Gene3D - 18 129 IPR036426 -
Bisa08g0327 512 SUPERFAMILY Protein kinase-like (PK-like) 393 483 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g0327 Bisa-ChrBisa08 5823600 5830820 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g0327 406 485 Receptor kinase-like Gene Family AT3G45860 53.659 3.72e-15 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Bisa08g0327 S_locus_glycop 1.8e-05 No_clan