LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa08g0323	ATGAATTTTGTTGGAAGTAGCAATAATAATTACAATCATAACGCCATGCAAAAGTTCAAAGGCGTAGTGCCTCAACAAAATGGCCATTGGGGTGCTCAAATCTACGCAAATCACCAAAGAATATGGCTTGGAACCTTCAAGACTGAAAAAGAAGCGGCCATGGCCTATGATAGTGCCACCATCAAGCTCCGGAGCGGCGAGAGCCACCGGAATTTCCCGTGGAATGACCGGACGGTCCAGGAGCCGCTCTTCCAAAGCCACTACACCACGGAGGCAGTCCTAAGCATGATCCGAGACGGCACTTACCCTTCCAAGTTTGCTTCTTTTCTCATCAGCAACCAAACCCTAACCCTAACCCTAACCCTAACACTAAATAATGGCGAGGAATCAGGAATCACTAGGGTCACAAATAATATTATTAACCCTAACAACACCGGTGACACCAAATTCTCATGCACCCAACTCTTCCAAAAGGAACTCACACCCAGTGACGTGGGCAAACTCAATAGGCTTGTCATCCCTAAGAAGCATGCAAGTAGGTATTTCCCTTGTGTTGCTGGAGTCACAGATGAAGGTGACAATATTAATAACAATAATTATTTTAACTATCATAATAATAATATGGATGTTAATAGTGACACAGAGCTTGTGTTCTATGACAAGTTGATGAGGTCATGGAAGTTTAGGTATTGTTACTGGAAAAGCAGTCAGAGTTTTGTGTTCACAAGAGGTTGGAATAGGTTTGTGAAGGACAAGAATTTGAGGGCTAAGGATGTTATTGTGTTTTATAAGTGTGAGCCTGCAAATAATAATAATAATAATAATGGGAATGAAGTGTTTTGCTTGATTGATGTGATCTATAATGAGGATTATAATAACGTTGATGGGGAGAGGGAAGGATATTTCAGGCAGGGTTCTGGGAAAATGTTGAGTTTTGATATGAATTACGAAGCAGAAGAAGACAACAACGATGTTGACGACGATGAGATAAAGGATAGAAAGGAAATGTTGCATTCTTCGGCACATGAAGCTCAAAAAGGGTTGAGGCTTTTTGGTGTAACAATTAATTAA	1071	0.4099	MNFVGSSNNNYNHNAMQKFKGVVPQQNGHWGAQIYANHQRIWLGTFKTEKEAAMAYDSATIKLRSGESHRNFPWNDRTVQEPLFQSHYTTEAVLSMIRDGTYPSKFASFLISNQTLTLTLTLTLNNGEESGITRVTNNIINPNNTGDTKFSCTQLFQKELTPSDVGKLNRLVIPKKHASRYFPCVAGVTDEGDNINNNNYFNYHNNNMDVNSDTELVFYDKLMRSWKFRYCYWKSSQSFVFTRGWNRFVKDKNLRAKDVIVFYKCEPANNNNNNNGNEVFCLIDVIYNEDYNNVDGEREGYFRQGSGKMLSFDMNYEAEEDNNDVDDDEIKDRKEMLHSSAHEAQKGLRLFGVTIN	356

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa08g0323	356	Gene3D	AP2/ERF domain	17	74	IPR036955	GO:0003700\|GO:0006355
	Bisa08g0323	356	ProSiteProfiles	B3 DNA-binding domain profile.	156	286	IPR003340	GO:0003677
	Bisa08g0323	356	Pfam	B3 DNA binding domain	156	263	IPR003340	GO:0003677
	Bisa08g0323	356	Pfam	AP2 domain	18	64	IPR001471	GO:0003700\|GO:0006355
	Bisa08g0323	356	PANTHER	B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3	15	354	IPR044800	GO:0003700
	Bisa08g0323	356	CDD	AP2	17	75	IPR001471	GO:0003700\|GO:0006355
	Bisa08g0323	356	ProSiteProfiles	AP2/ERF domain profile.	18	73	IPR001471	GO:0003700\|GO:0006355
	Bisa08g0323	356	SUPERFAMILY	DNA-binding pseudobarrel domain	154	266	IPR015300	-
	Bisa08g0323	356	SMART	rav1_2	18	79	IPR001471	GO:0003700\|GO:0006355
	Bisa08g0323	356	CDD	B3_DNA	155	263	IPR003340	GO:0003677
	Bisa08g0323	356	Gene3D	-	151	285	IPR015300	-
	Bisa08g0323	356	SUPERFAMILY	DNA-binding domain	18	75	IPR016177	GO:0003677
	Bisa08g0323	356	FunFam	AP2 domain-containing protein RAP2.8	17	74	-	-
	Bisa08g0323	356	SMART	B3_2	156	273	IPR003340	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa08g0323	Bisa-ChrBisa08	5762007	5763077	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa08g0323	4	355	RAV Transcription Factor Family	AT1G50680	47.765	3.95e-99	295

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-RAV	Bisa08g0323		B3	6.7e-23	CL0405