Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g0321 ATGTACGCTGGAGGAGCTCGCAAGAGGGGAAGGCCTGAAGCTGCCTTTAACGGCAATGGCGGCGTCAAGAAATTCAAGCCAGAAATGGAGTCCTTTACAAGTGGTTTAGGAAGCAAATCAAAGCCATGCACAAAATTTTTCAGCACCTCTGGCTGTCCATTTGGCGAGGGATGTCATTTCTCGCACTATGTTCCTGGTGGCATCAAAGCTGTATCTCAAATGATTAATGTTGGTGGCAACCCTGCTCATCCACAACTTGGGAAAAATCCAACAGTTCCACCATCCTTTGCTGATGGCTCTTCTACTCCGGCTGCTAAAACCCGGTTGTGCAACAAGTATAATTCAGCTGAAGGTTGCAAATTTGGTGAGAAGTGCCACTTTGCCCATGGAGAATGGGAGCTTGGAAAGCCTCTGGTTCCATCATATGAAGACCCTCGTTCCTTGGGACACATGCAAAGCAGGGGTGGTGGCCGGGTTGAGGCCCCACGTCCGGATCAAGGTGCTGCAGCCAACTTTGGAGCCTCTGCTACTGCTAAGATTAGCGTTAATGCTTCCCTTGCTGGAGCAATCATTGGAAAAAATGGAGTCAACTCTAAGCAAATTTATCGTGTGACTGGAGTAAAACTTTCTATCAAAGATCATGATTCTGATCCTAACCTCAAGCACATTGAGCTCGAGGGAAGCTTTGATCAGATCAAGCAAGCAAGTGCAATGGTTCGTGAACTTATAGCAAATGTTGGTTCTGTTTCTAGACCTCCAATGAAAAACTTTTCTGCAAATGCCCATCCTTCTGCCCCAGGGAGTTTCATGAAGACTAAGCTATGTGATAATTTTGCTAAGGGCTCCTGCACTTTTGGAGAAAGGTGCCACTTTGCACATGGCGCAAATGAGTTACGCAAGCCTGTAATATGA 912 0.466 MYAGGARKRGRPEAAFNGNGGVKKFKPEMESFTSGLGSKSKPCTKFFSTSGCPFGEGCHFSHYVPGGIKAVSQMINVGGNPAHPQLGKNPTVPPSFADGSSTPAAKTRLCNKYNSAEGCKFGEKCHFAHGEWELGKPLVPSYEDPRSLGHMQSRGGGRVEAPRPDQGAAANFGASATAKISVNASLAGAIIGKNGVNSKQIYRVTGVKLSIKDHDSDPNLKHIELEGSFDQIKQASAMVRELIANVGSVSRPPMKNFSANAHPSAPGSFMKTKLCDNFAKGSCTFGERCHFAHGANELRKPVI 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g0321 303 ProSiteProfiles Type-1 KH domain profile. 175 239 - -
Bisa08g0321 303 SMART c3hfinal6 104 131 IPR000571 GO:0046872
Bisa08g0321 303 SMART c3hfinal6 37 64 IPR000571 GO:0046872
Bisa08g0321 303 SMART c3hfinal6 271 295 IPR000571 GO:0046872
Bisa08g0321 303 SUPERFAMILY CCCH zinc finger 103 135 IPR036855 GO:0046872
Bisa08g0321 303 ProSiteProfiles Zinc finger C3H1-type profile. 269 296 IPR000571 GO:0046872
Bisa08g0321 303 MobiDBLite consensus disorder prediction 1 22 - -
Bisa08g0321 303 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 271 294 IPR000571 GO:0046872
Bisa08g0321 303 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 106 131 IPR000571 GO:0046872
Bisa08g0321 303 Gene3D K Homology domain, type 1 170 266 IPR036612 GO:0003723
Bisa08g0321 303 PANTHER CCCH ZINC FINGER/TIS11-RELATED 25 173 IPR045877 GO:0003729
Bisa08g0321 303 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 168 246 IPR036612 GO:0003723
Bisa08g0321 303 CDD KH-I_AtC3H36_like 178 243 - -
Bisa08g0321 303 Pfam KH domain 178 241 IPR004088 GO:0003723
Bisa08g0321 303 Gene3D - 99 136 - -
Bisa08g0321 303 Gene3D - 267 300 - -
Bisa08g0321 303 FunFam Zinc finger CCCH domain-containing protein 264 300 - -
Bisa08g0321 303 ProSiteProfiles Zinc finger C3H1-type profile. 37 65 IPR000571 GO:0046872
Bisa08g0321 303 FunFam Zinc finger CCCH domain-containing protein 99 136 - -
Bisa08g0321 303 ProSiteProfiles Zinc finger C3H1-type profile. 104 132 IPR000571 GO:0046872
Bisa08g0321 303 SUPERFAMILY CCCH zinc finger 38 64 IPR036855 GO:0046872
Bisa08g0321 303 SMART kh_6 174 244 IPR004087 GO:0003676
Bisa08g0321 303 Pfam RNA-binding, Nab2-type zinc finger 42 62 - -
Bisa08g0321 303 SUPERFAMILY CCCH zinc finger 268 300 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g0321 Bisa-ChrBisa08 5741144 5743999 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g0321 38 148 C3H Transcription Factor Family AT1G68200 26.126 5.12e-06 45.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bisa08g0321 KH_1 1.3e-10 CL0007