Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g0314 ATGGCTTCATCTTTGGAGGAGCTTCTTGCAAAGGATGGGTTCAAAGGAAGTAGAAGAATGACAAGGTCCAGATCTTCCTTCCAGTCTGATGCTGTAATTATGCCACATTTCCGCGACCAACAAAAGAGACAATCTGTAGGTGAAAGAATTAAAACAGAGAGAACAAAATCTGATGTCTCCCAGTATCATACTAAAGGTGAATCATCGCATAGTAACGCTGGAAAGAGCATGAGACCAAGGGATAATCTTGCTAAAACAGAGATAATAGATGAGGGGCTGAAGGATGGAAGTGAGGAGAAACCTCATAGCATTACTGAGGTAGATAAAAAATTTGATCCAAAATCATCAGAAAATAAGCCAAGACATGAGATAACTGAGGTGAGTGAGCAAGAAGATAACAGAATTAAAGATATATATTCTAATGAGATGTCCAATGCAAAGAGAGGGAAAGAGAAGAATTCCAATGAGTTTAGTGAAAAGGAAAAATGGCGAGAAATGCCTGTCAAAGATGCAAAGGTGGATAAGAGGCATGGCAGTGTTTCCAATTTAAACATGCAAGGACATTTTAGAGCAAATACAAGGAAGAGTGTAGAAGGACAGGGGAAATCTTATAATAAATCTACTAGCAAAAGCTTTGGAAATAGTTTTAAAAAAAATCATGATGATACTGTACAAGCAGCTTCTAATCTAGCTCTTGATGAAGTTGCTGTCCAAGCAATTGTTTCCATTTTAAATGGATATATAAAACGTTTTCTAAAAGATGAGGACTTTCGGACTACATTGCGTCACAATTGTTTCTCCTCGTTGAATTTTATTGATCTGGAAGAAGAGAACAGCGTTGAGATCAAAGTCATAAGAAGTCTTGAACAAGCAATTGAGACAATAGAACAAGTTGCTGAGGAATCCATAGCTTCCAAAGATTTTAAAAGAGCCTCATTGCAGCTAAGCATTATTACAGGTTTGAGTTTAAATGACTTGAAATATGAATTTACGTGTGGGATTCCAAATTATAAGTTGTCAGCTTGTGCTCATCTTTACCTCAGTGTGGTATATAAGATACAGAGAAAAGATAAGGTGTCGGCAAAGCATCTTTTACAAGTGTTTTGTGATTCGCCTTTCCAGGCACGGACAACATTGTTGCCTGAACTGTGGGAGTACCTATTTTCTCCACATCTTTTACATTTGAAGGCATGGTACAATAACGAAGTTGCTACTCTAGCAGATATGCCAAGCAGAACAAGAAAACTGAATCTTCTTGAAAATGTCTATAATGAAAATTTGGATTCTGGAACTTATATGTTTGCTGCATACTACAAAGATTGGCTCACTGAAGGAGTAGAACCTCCATCTATTCCTTCAATCAGCATTCCATCAATCTCTGTCATGGGAAGTCAGTGGGGAAGTTCAAATCATTCTTCAGAGCTTTCTAGCTCCATGGATCCATTCTCACCACAACCAATAGTGAGCAAAAAACTTTATGATTCCGTCTTTAGTAGCTTGAGTAAACCCGGAGTTGAGAAGAATGAAGATAATGAGGATGATAATGATGTAGGTACTTGTGTGAGAGGCTCTTATGGTTCAACTATTGTTAAACAAACATTTACATATGCATCTGAGATAGTAAAATTCGCTGATCAAGATTTTGAAGAAGACACCACTAAGAATGTACCAGTTGTTTTGATGCATTCTGTAAGTTTATCTTTTCCAACCATACCGCAGGAATTTATTTGTCCTCTAACTGGAAATCTATTTGAGGAACCAGTCACTATAGAGACTGGTCAAACCTTTGAACAAGCAGCCCTGAAGTCATGGTTTGAAAAGGGACACAGAACATGTCCGGTAACAGGAGCTACTTTAAATTGTGTATCCATGCCACTAACCAACCTTGTTTTGAAGCGACTGACTCATCATTGGAAGTCAGAACATTTAAGTCAGTTCCTGGATTCTGCTTCTCAAATCTTGAAAAATTCAAGGGCATCTAAGTTGAAGCTCAGGGATGAGATTGCTACTTTCAAATTAGAGAGTTTTTTCACTGTGTTAAATGAAGAGGATAAAATAACTTATGCCAGGCATCTCATCTTTTTAGGTGTTTTACCATTTCTTCTTAGGAGGTTTGAGCTGGGAAATTTGGAAGAGAAAACACATGTGGCCGCACTCTTTCTTAATTTTATTGAAGCAGACTCTTGTTGCATATATCAGATAGCAAGAGATATTAACAAAAAATGTCTTCTTGAGCTTCTTAACGGCAAAGAGGTTACTCCAAGAACTAACGCAGTATCATTGCTTACTGAACTTGTAGCACTAAAGAGAAGAAAGGATGTCACTTCATTCTTAAGTGGCTTGAAGGGTGAAGATGTATTTGTTACAATGCATGTTCTGGTCGTGCATCTCAAGAATTCTCCACTTCATCAAAAACCCCTAATTGCTGTCCTTTTATTGCACTTTGATCTACTGTTGGAGCCTCAAAAGTATAGCATATACAGAGAGCAGGCTGTGAATTCCATTTCAGTGGCTCTAGATGCTAGTTTAAATGATGAGAAAGTCCGAGAAAAGTGTTGCAGAGCACTTTTTATCTTGGCAGGGCATTTTTCTTCCACTGGGAAGATACTGACCAAGAGAGGTATATTAAAAGAAGTGGGATATCAGGCTGGTATTTCAGAAGCCAAAAATCGTGACCATGAGGAAGAGGGTTTATTACAGAATGGGGCCATTTTTTTTGAAGAGGAAGAAGAAAGGAGCAAAGTGTGGTTGGTGAACTTGTTAGAATCAATGATTGGTGATGGAGAAAGCCTATTTTTGAAGACTGTTTCTAGATGTCTAGCCTCTAGACACCCAGATTTGGTCAGCATATGTCTAATAACTATTGCATGGTTGAGCTCCTCACTTTCTATGCAATGTAATGCTGGACTACACCTTGCTGCATTCTTAGCTGTCATCTCTCAGGTGAAAGAAGTCCTGGAAAATCCAGAACTTGAACTCAAGACTCTTGCTTCTATGTGCTTGCTTAATTTTAGCAGAATATCAGAATGCAGAACACTTTTGATGACTATGGCAGAAGATATTGCTGCCCCTCTTCATAAACTCGCTGACATGACATGGACTGCAAAGGAGCTGCAAGCCATTGTTTTTGGGGTGGATCTGTAA 3144 0.3836 MASSLEELLAKDGFKGSRRMTRSRSSFQSDAVIMPHFRDQQKRQSVGERIKTERTKSDVSQYHTKGESSHSNAGKSMRPRDNLAKTEIIDEGLKDGSEEKPHSITEVDKKFDPKSSENKPRHEITEVSEQEDNRIKDIYSNEMSNAKRGKEKNSNEFSEKEKWREMPVKDAKVDKRHGSVSNLNMQGHFRANTRKSVEGQGKSYNKSTSKSFGNSFKKNHDDTVQAASNLALDEVAVQAIVSILNGYIKRFLKDEDFRTTLRHNCFSSLNFIDLEEENSVEIKVIRSLEQAIETIEQVAEESIASKDFKRASLQLSIITGLSLNDLKYEFTCGIPNYKLSACAHLYLSVVYKIQRKDKVSAKHLLQVFCDSPFQARTTLLPELWEYLFSPHLLHLKAWYNNEVATLADMPSRTRKLNLLENVYNENLDSGTYMFAAYYKDWLTEGVEPPSIPSISIPSISVMGSQWGSSNHSSELSSSMDPFSPQPIVSKKLYDSVFSSLSKPGVEKNEDNEDDNDVGTCVRGSYGSTIVKQTFTYASEIVKFADQDFEEDTTKNVPVVLMHSVSLSFPTIPQEFICPLTGNLFEEPVTIETGQTFEQAALKSWFEKGHRTCPVTGATLNCVSMPLTNLVLKRLTHHWKSEHLSQFLDSASQILKNSRASKLKLRDEIATFKLESFFTVLNEEDKITYARHLIFLGVLPFLLRRFELGNLEEKTHVAALFLNFIEADSCCIYQIARDINKKCLLELLNGKEVTPRTNAVSLLTELVALKRRKDVTSFLSGLKGEDVFVTMHVLVVHLKNSPLHQKPLIAVLLLHFDLLLEPQKYSIYREQAVNSISVALDASLNDEKVREKCCRALFILAGHFSSTGKILTKRGILKEVGYQAGISEAKNRDHEEEGLLQNGAIFFEEEEERSKVWLVNLLESMIGDGESLFLKTVSRCLASRHPDLVSICLITIAWLSSSLSMQCNAGLHLAAFLAVISQVKEVLENPELELKTLASMCLLNFSRISECRTLLMTMAEDIAAPLHKLADMTWTAKELQAIVFGVDL 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g0314 1047 ProSiteProfiles U-box domain profile. 570 645 IPR003613 GO:0004842|GO:0016567
Bisa08g0314 1047 Pfam U-box domain 571 642 IPR003613 GO:0004842|GO:0016567
Bisa08g0314 1047 SUPERFAMILY RING/U-box 562 642 - -
Bisa08g0314 1047 MobiDBLite consensus disorder prediction 195 215 - -
Bisa08g0314 1047 SMART Ubox_2 574 638 IPR003613 GO:0004842|GO:0016567
Bisa08g0314 1047 MobiDBLite consensus disorder prediction 1 174 - -
Bisa08g0314 1047 MobiDBLite consensus disorder prediction 80 174 - -
Bisa08g0314 1047 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 570 645 IPR013083 -
Bisa08g0314 1047 PANTHER OS04G0584500 PROTEIN 565 1042 - -
Bisa08g0314 1047 Coils Coil 285 305 - -
Bisa08g0314 1047 CDD RING-Ubox_PUB 572 619 IPR045210 -
Bisa08g0314 1047 SUPERFAMILY ARM repeat 673 1013 IPR016024 -
Bisa08g0314 1047 MobiDBLite consensus disorder prediction 41 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g0314 Bisa-ChrBisa08 5643953 5651659 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g0314 526 772 U-box Gene Family AT1G29340 26.354 8.05e-14 73.9