Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g0308 ATGGATGACAAGTTTCCCAAGATGAAAATCTTCATGCAGAAGGATTTGTCAACTTATTTTAAAGAAATGGCAACGGGATCAAAGATTTTGGATGATCCAATTATTAGAGGCTCTCAGACTCTCACTGCTTCTCATCTTTCATGTGGAATGGATTCAATTTCATCAATGGCATCAACTGAAAAGCTTCTTCCAATTTCAGATTCCAAAGTAGAAGAGCTACCTGGAGCCACTGTTATTAGTCATCTCCTTCCAGGGTTCGCTGATCAAGAGGAAATCACCAAAGTGCATCAGAAAAATCACTTCATTTCCAAATTCAATCCCCTCTGTACTCCTACTGCTTCAGCCTCGGGAACCAAAGAAAGCTTCATTCCTCTAAATCTGTTGGAAACACTTCCAGTATTACCTAGAACACACATATCTGATGAGCCGGCTTCTCCAGCTTCTTCAACTGCTACATCTAGATTCCCATATTTGACTTTGTTTTTGCAGGAACCCTCAATGTTATTCTCATCACCCTCAAAGATCACCGAGTCACATGGCAAGCCCAGAAATTCTGAATCTCTGCCAGCAACTTCAGACCCTTCATTTTCTGTGTCCCAGTTTGATCCAATTCAGAATCAAGCAGGTAGAGATACACTCAAAATGAATCAGAATCTTAAAAACTTCCGATCCAAGTCTTTCAATGACTATTGCTTGAGCACCACAAAGACTCAGCCCATGAAATATGCTGGACGAGGCAAGCTGTTTAAAGGGGTGAGGCAGAGACACTGGGGTAAATGGGTTGCAGAGATTAGATTACCAAGGAATAGGACCCGGGTTTGGCTAGGGACATTTGAAACAGCTGAAGATGCAGCCATTGCTTACGACACAGCAGCATACATACTACGTGGAGAATGTGCTCAATTAAACTTTCCAGATCTAAAGCATCACATTAAGGCCAATTCTTTGAATGGAACTACTGCTGCCCTTCTGGAGGCAAAGCTTCAAGCAATATCACAAGGTATTTCTTCTCAGGGAATGACCACTGTTTCTGTGGCAGGGTCATTGAGTAAGCACAAAGATGAGAAAGCCAAATTGAACAGTAAAAACCAGAATCCATTTAGAAAAGAAGAGCAGTTTGAGACAGAGAGCAAGGTTGGAGCTGATACAATTGATAGAAGCAAAAATAGCCATCAGGAGATATCGGATGTAGAAGCTATTCAGTTAAGTAGAATGCCCTCCTTAGACATGGACACCATTTGGGATTCCCTTTTAGTCTCTGATTCATGA 1269 0.4161 MDDKFPKMKIFMQKDLSTYFKEMATGSKILDDPIIRGSQTLTASHLSCGMDSISSMASTEKLLPISDSKVEELPGATVISHLLPGFADQEEITKVHQKNHFISKFNPLCTPTASASGTKESFIPLNLLETLPVLPRTHISDEPASPASSTATSRFPYLTLFLQEPSMLFSSPSKITESHGKPRNSESLPATSDPSFSVSQFDPIQNQAGRDTLKMNQNLKNFRSKSFNDYCLSTTKTQPMKYAGRGKLFKGVRQRHWGKWVAEIRLPRNRTRVWLGTFETAEDAAIAYDTAAYILRGECAQLNFPDLKHHIKANSLNGTTAALLEAKLQAISQGISSQGMTTVSVAGSLSKHKDEKAKLNSKNQNPFRKEEQFETESKVGADTIDRSKNSHQEISDVEAIQLSRMPSLDMDTIWDSLLVSDS 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g0308 422 PRINTS Ethylene responsive element binding protein signature 249 260 IPR001471 GO:0003700|GO:0006355
Bisa08g0308 422 PRINTS Ethylene responsive element binding protein signature 271 287 IPR001471 GO:0003700|GO:0006355
Bisa08g0308 422 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 125 417 - -
Bisa08g0308 422 Gene3D AP2/ERF domain 248 306 IPR036955 GO:0003700|GO:0006355
Bisa08g0308 422 ProSiteProfiles AP2/ERF domain profile. 248 305 IPR001471 GO:0003700|GO:0006355
Bisa08g0308 422 SMART rav1_2 248 311 IPR001471 GO:0003700|GO:0006355
Bisa08g0308 422 MobiDBLite consensus disorder prediction 351 393 - -
Bisa08g0308 422 FunFam Ethylene-responsive transcription factor 2 247 306 - -
Bisa08g0308 422 Pfam AP2 domain 249 297 IPR001471 GO:0003700|GO:0006355
Bisa08g0308 422 SUPERFAMILY DNA-binding domain 248 306 IPR016177 GO:0003677
Bisa08g0308 422 CDD AP2 247 307 IPR001471 GO:0003700|GO:0006355
Bisa08g0308 422 MobiDBLite consensus disorder prediction 172 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g0308 Bisa-ChrBisa08 5483749 5485017 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g0308 112 417 AP2-EREBP Transcription Factor Family AT4G13620 44.268 3.20e-71 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bisa08g0308 AP2 1e-11 CL0081