Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g0306 ATGGCATCAACATCTGGTGCCAACAAGACTCCATTCCCTGCGAAAGAGGCAGCTTCAGGCTATCATCCTTATCCTGCACCTCTTGCAAAATACGAGGATATTGTAGCTGATCCTAGGCTCTTTATGCATACCTTGGAAAAGCTTCACACTTCTATGGGTACCAAGTTCATGATCCCCATTATAGGGGGAAGAGAATTAGATTTGCACAAGCTCTTTGTGGAAGTGACTTCGCGTGGAGGCATTGAAAAGATTATTAGAGAAAGAAGATGGAAAGAAGTAACTGCTGTTTTCAACTTTCCATCTACAGCAACAAATGCTTCTTTTGTGTTGCGGAAGTACTATGCTTCATTGCTTTTTCACTATGAGCAAATATACTATTTTAAGGCCCAGGGATGGACCCCTTCAAGTCCTGATGCTTTGCAGAGTCAATCAACGATGCCAGTTCATGCTCAAAGAACACAGTTTTTACCTCCTCCATTTAGTGCTGCTGAATTGTCTGAAGCAATGCCAGCTTCTTCTACAGGAACTCCAGTGATTGGGGTGATTGATGGCAAATTTGAGAGTGGGTATCTTGTTACTGTTACAATAGGTTCAGAGAAACTTAAAGGTGTACTGTATCAGGCTCCACAAAACCCTGTACTCCCAGCAACACAACAACATAATAGTGTTCCAGTTAATAACAACAATACCTCATCAGCTTCGTTGGGTGTCCATCGTCGCCGGCGCAAGAAATCTGAGATAAAAAGGAGAGATCCTGCTCATCCAAAACCCAACCGCAGTGGCTACAATTTCTTCTTTGCAGAGCAGCATGCAAGACTTAAACCACTTCACCATGGGAAGGACCGAGAAATCAGTAGGATGATTGGTGAACTCTGGAACAAGTTAAAGGAGCCGGAGAAAGCAGTTTATCAAGAGAAGGCTGTTAAGGATAAAGAGAGGTACAGAGCAGAAATGGAGGATTATAGGGAGAAACTGAAGACAGGTCAGGTTATAAGTGATGCTGTGCCACTGCAACAACGACTTCCTAAGACCGACATGGTGGATGCCGAGGGAGGAGATTCTCCTCAAACACCAGATGAGAGCAGTTCTAGTGAAAGTGAATATGAGGATGATAAAGGTCCAGAGCATGTGTTGGATATGGATGCATCTCCTGTAATAACAGGGGTTACAGGGGTGGGTGCTGAATCTAGTTTTCTGGGTTTAGAGAAGTCATCAAAGGAAGGAGAAATTGAGTTTCAGAAGAAAGATGGGGATGAAGCAGAACAACAAGTTCAAAAGATTGATGAGACCAAAAGTATGATGGCTATGTAG 1311 0.4333 MASTSGANKTPFPAKEAASGYHPYPAPLAKYEDIVADPRLFMHTLEKLHTSMGTKFMIPIIGGRELDLHKLFVEVTSRGGIEKIIRERRWKEVTAVFNFPSTATNASFVLRKYYASLLFHYEQIYYFKAQGWTPSSPDALQSQSTMPVHAQRTQFLPPPFSAAELSEAMPASSTGTPVIGVIDGKFESGYLVTVTIGSEKLKGVLYQAPQNPVLPATQQHNSVPVNNNNTSSASLGVHRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHHGKDREISRMIGELWNKLKEPEKAVYQEKAVKDKERYRAEMEDYREKLKTGQVISDAVPLQQRLPKTDMVDAEGGDSPQTPDESSSSESEYEDDKGPEHVLDMDASPVITGVTGVGAESSFLGLEKSSKEGEIEFQKKDGDEAEQQVQKIDETKSMMAM 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g0306 436 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 255 322 IPR009071 -
Bisa08g0306 436 PRINTS High mobility group (HMG1/HMG2) protein signature 306 326 - -
Bisa08g0306 436 PRINTS High mobility group (HMG1/HMG2) protein signature 287 306 - -
Bisa08g0306 436 FunFam High mobility group B protein 15 29 142 - -
Bisa08g0306 436 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 11 365 - -
Bisa08g0306 436 Gene3D High mobility group box domain 239 334 IPR036910 -
Bisa08g0306 436 MobiDBLite consensus disorder prediction 333 436 - -
Bisa08g0306 436 SMART hmgende2 254 323 IPR009071 -
Bisa08g0306 436 MobiDBLite consensus disorder prediction 218 235 - -
Bisa08g0306 436 SUPERFAMILY HMG-box 243 327 IPR036910 -
Bisa08g0306 436 Coils Coil 410 430 - -
Bisa08g0306 436 CDD HMG-box_AtHMGB9-like 255 321 - -
Bisa08g0306 436 Gene3D - 27 138 IPR036431 GO:0003677
Bisa08g0306 436 Coils Coil 304 324 - -
Bisa08g0306 436 MobiDBLite consensus disorder prediction 402 426 - -
Bisa08g0306 436 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Bisa08g0306 436 SUPERFAMILY ARID-like 33 135 IPR036431 GO:0003677
Bisa08g0306 436 Pfam HMG (high mobility group) box 255 322 IPR009071 -
Bisa08g0306 436 FunFam High mobility group B protein 15 237 332 - -
Bisa08g0306 436 MobiDBLite consensus disorder prediction 218 261 - -
Bisa08g0306 436 SMART bright_3 36 127 IPR001606 GO:0003677
Bisa08g0306 436 Pfam ARID/BRIGHT DNA binding domain 40 122 IPR001606 GO:0003677
Bisa08g0306 436 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Bisa08g0306 436 SMART ARID_2 32 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g0306 Bisa-ChrBisa08 5465536 5470503 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g0306 1 350 ARID Transcription Factor Family AT1G04880 62.432 7.63e-139 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Bisa08g0306 ARID 2.7e-18 CL0123