Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g0274 ATGGCGTTTCTTCCCCAACCCCAAGAAGGCGAAGAGGACACCACCGTCGACGTCCACACCACCCACGGCACTCCCATTCGGTATCTTCCTCTCGATCATCTCTACTCTGCTACATCCCCTTGCCGCGTCAGCGCGAGTGGTTCTTCCAACGTCATGTCGAAGAAGGTCAAGGCCCGCAAGCTCAATCCTACCCACTTCGAGGTCGACCCTGATCACAAGAACTCAATTCCCAAGCCCCCGCTTGTATATGTGTACTCTCGCCGTCATAAGAGGCCCCTGCATTCCTCAGAAAGCTTGTCGTTTCATGATTCTTTGGTTGGCCGGGGTGGGTCCACCTCGGATATTTGTAAAATTGATGATTCTGGGGAGGACCGGGAGAACGAGAATTCTGAGGTTGGGAAGCCCAAGAAGAAGAGGAAAGCTGGGAGCAGTGAATTGGTGAATTTGGGTGTGGATTTGAGCACATTGGGTAGTCTTGATGGGCCTCGGTTGAGGGACTGTCGTGATCACAGTGTTACTGATATTAGTCAGCGTGCTGCTTTAGAAAAATTTCCAAAGCTATTGCCTGCATCCCGCACGGTAAAGAGATGGGTCAGGTTAACCTTTGATAATGCTGATCCTGAGACATTGGTCGGATTACGATGCAAGGTTTATTGGCCAATGGATTTAAAATGGTACGTTGGTTCCGTCATAGGTTATGATTCAGAAACCAAGATACATCAGGTTAAATATGAAGATGATGATGAGGAAAACTTAATTCTTTCAAATGAGAAAGTAAGATTCCATGTTTCCCGTGAGGAACTGAAGCAATTAAACTTGAGTAGTTGCAACATTTCTGATTACGATGCTGAAGAGTTGCTTGCTTTGGCTGCAAGTTTGGATAGCTGTCAAGAGTTTGAGCCTGGGGAAGTCGTGTGGGCCAAGCTAACAGGCCATGCAATGTGGCCAGCTCTTGTTATGGATGAATCACTTGCTGGCAACTGTAAGGGTTTAAAATCATTTTCAGGAGGAAGATCGGTTCCTGTGCAATTTTTTGGCACCCATGACTTTGCAAGGGTGAGACTGCAGCAGGTGAAATCATTTCTCACTGGACTTCTTTCTCGTCTACACTTGAAGTGCAAGAAACCTCATTTTTTTGAAGGATTGGAAGAGGCGAAAATGTATTTAAGCAAACAGAAGCTCCCTTTTGAGATGCTACGATCGCAAAAAAGATGTAAGGCTGATGACTGTAAAACTATACATGGAGAGGATGAAGGATGTTCAGATTCAGGTGATGATGGTTTAGATGACAGATGGATTCTGACAGCATTGAAAAACATTGAAGCTTCTCCATATGTAGTAGGAGACTTGAAAATTATAAGCCTTGGGAGAATTGTTCAAGATTCTGTAAATTTCCAAGATGGAAGTGTAATCTGGCCAGAGGGGTATGTGGCAGTGAGGAAGTTTACTTCAATTACTGACCCAAATGTTTGTACCTTGTATAAGATGGAGGTCTTGAGAGATCCAGAATCAAAGATTCGACCGCTATTCAGGGTGACACTGGATAGTGGAGAGCAGTTCAATGGTCCTACAGCATCTGCTTGCTGGAATAAAATATACAAAAGGATAAAGAAAATGGAAAGTGGTGTTTCTGAAGTTTCCATTGCAGATGGTGGGCTTGAAAGGGACTTTAAATCTGGCTCTGATATGTTTGGATTCTCCAATCCTGAAGTGGCTAAACTTATACAGGGATTATCTAAATACAGTGCCTCTCCAAAAAACTTACTGTGCAAGTTAGGTTCTGGAAGAGATAGCGATTTGCCTATTGGTTATAGGCAGGTTCATATTGATTGGTTTGACCTTGATAAATGCAATGTGTGTCACATGGATGAGGAGTACGAGAACAATCTGTTTCTTCAGTGTGACAAATGCAGAATGATGGTCCATGCCAGATGTTATGGAGAACTAGAACCTCCTAATGGAGTGCTATGGTTATGCAACTTATGTCGTTCAGGCGCCCCCTCTCCCCCACCTTGCTGCTTGTGTCCACTTATAGGAGGTGCAATGAAGCCTACAACAGATGGACGATGGGCTCATTTGGCATGTGCCATGTGGATACCTGAAACTTGCTTAGCTGACGTCAAGAGAATGGAACCTATTGATGGGATAAGTAGAATCAGTAAGGATCGCTGGAAGTTGTTATGTAGCATTTGTGGTGTACCTTACGGTGCCTGCATCCAGTGCTCAAACAATTCTTGTCGAGTAGCATATCATCCACTTTGCGCACGCGCTGCTGGTCTCTGTGTTGAGCTTGAGAATGAGGACAGGCTCTATCTACTTTCTGTTGATGATGATGAAGATCAGTGCATTCGCTTGCTTTCTTTCTGCAAGAAACATAGGCATCCATCAAATGATCATTCTATTGCTGATGAACGCATTGGGCGAGTTGCCAGTCAATGTTCGGACTATAAACCACCTCCCAACCCATCCGGTTGTGCTCGTAGTGAGCCATACAATAATTTTGGCAGGAGAGGGCGAAAGGAACCTGAAGCACTTGCAGCTGCATCCTCGAAACGCCTATTTGTAGAGAATCAATCTTACTTAGTTGGTGGATATTGCCAGCATGGGTTGTCAAAAAATGTAGAGCCATCTGGAAGAGGAGTTTGCTCTAAATTCTTTTGTAGCCAGCAAAGGCTGAAAACCTCTCTGGTTGATGCTTCAGATGGCATACTTACTATTGCTGAGAAATATAAGTACATGCGGGACACCTTCCGGAAACGGCTAGCTTTTGGGAAATCAAGAATCCATGGATTTGGCATCTTTGCAAAGCACCCATATAAAGGCGGGGACATGGTGATTGAATACACTGGTGAACTTGTTAGACCTAGCATAGCTGACCGGAGAGAGCACTTTATATATAATTCATTGGTGGGTGCTGGGACATACATGTTTCGGATTGATGATGAACGGGTCATTGACGCCACTAGAGCAGGAAGCATTGCTCATTTAATTAATCATTCTTGTGTACCAAATTGCTATTCAAGAGTTATCAGTGTTAATGGTGATGAGCATATAATAATCTTCGCAAAGAGGGACATCAAACAATGGGAAGAGCTCACCTACGATTATAGGTTTTTTTCGAGCGATGAACGACTAGCTTCTCTATGTACCTCGAAGTGA 3159 0.4416 MAFLPQPQEGEEDTTVDVHTTHGTPIRYLPLDHLYSATSPCRVSASGSSNVMSKKVKARKLNPTHFEVDPDHKNSIPKPPLVYVYSRRHKRPLHSSESLSFHDSLVGRGGSTSDICKIDDSGEDRENENSEVGKPKKKRKAGSSELVNLGVDLSTLGSLDGPRLRDCRDHSVTDISQRAALEKFPKLLPASRTVKRWVRLTFDNADPETLVGLRCKVYWPMDLKWYVGSVIGYDSETKIHQVKYEDDDEENLILSNEKVRFHVSREELKQLNLSSCNISDYDAEELLALAASLDSCQEFEPGEVVWAKLTGHAMWPALVMDESLAGNCKGLKSFSGGRSVPVQFFGTHDFARVRLQQVKSFLTGLLSRLHLKCKKPHFFEGLEEAKMYLSKQKLPFEMLRSQKRCKADDCKTIHGEDEGCSDSGDDGLDDRWILTALKNIEASPYVVGDLKIISLGRIVQDSVNFQDGSVIWPEGYVAVRKFTSITDPNVCTLYKMEVLRDPESKIRPLFRVTLDSGEQFNGPTASACWNKIYKRIKKMESGVSEVSIADGGLERDFKSGSDMFGFSNPEVAKLIQGLSKYSASPKNLLCKLGSGRDSDLPIGYRQVHIDWFDLDKCNVCHMDEEYENNLFLQCDKCRMMVHARCYGELEPPNGVLWLCNLCRSGAPSPPPCCLCPLIGGAMKPTTDGRWAHLACAMWIPETCLADVKRMEPIDGISRISKDRWKLLCSICGVPYGACIQCSNNSCRVAYHPLCARAAGLCVELENEDRLYLLSVDDDEDQCIRLLSFCKKHRHPSNDHSIADERIGRVASQCSDYKPPPNPSGCARSEPYNNFGRRGRKEPEALAAASSKRLFVENQSYLVGGYCQHGLSKNVEPSGRGVCSKFFCSQQRLKTSLVDASDGILTIAEKYKYMRDTFRKRLAFGKSRIHGFGIFAKHPYKGGDMVIEYTGELVRPSIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCVPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSSDERLASLCTSK 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g0274 1052 CDD Tudor_Agenet_AtEML-like 211 261 - -
Bisa08g0274 1052 Gene3D - 443 583 - -
Bisa08g0274 1052 ProSiteProfiles PWWP domain profile. 301 364 IPR000313 -
Bisa08g0274 1052 Pfam F/Y-rich N-terminus 448 498 IPR003888 GO:0005634
Bisa08g0274 1052 SUPERFAMILY Tudor/PWWP/MBT 295 397 - -
Bisa08g0274 1052 PANTHER PHD FINGER PROTEINS 39 1045 - -
Bisa08g0274 1052 SMART fyrc_3 509 587 IPR003889 GO:0005634
Bisa08g0274 1052 SUPERFAMILY FYVE/PHD zinc finger 607 680 IPR011011 -
Bisa08g0274 1052 SMART PHD_3 616 663 IPR001965 -
Bisa08g0274 1052 SMART PHD_3 727 793 IPR001965 -
Bisa08g0274 1052 SUPERFAMILY SET domain 900 1044 IPR046341 -
Bisa08g0274 1052 Pfam PHD-finger 629 663 - -
Bisa08g0274 1052 MobiDBLite consensus disorder prediction 117 143 - -
Bisa08g0274 1052 SMART PWWP_4 299 363 IPR000313 -
Bisa08g0274 1052 CDD PHD_ATX1_2_like 616 662 IPR042010 -
Bisa08g0274 1052 ProSitePatterns Zinc finger PHD-type signature. 617 662 IPR019786 -
Bisa08g0274 1052 ProSiteProfiles FYR domain FYRC motif profile. 505 591 IPR003889 GO:0005634
Bisa08g0274 1052 ProSiteProfiles FYR domain FYRN motif profile. 442 501 IPR003888 GO:0005634
Bisa08g0274 1052 FunFam Histone-lysine N-methyltransferase 667 795 - -
Bisa08g0274 1052 CDD PWWP_AtATX1-like 300 395 - -
Bisa08g0274 1052 Pfam F/Y rich C-terminus 507 580 IPR003889 GO:0005634
Bisa08g0274 1052 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 664 795 IPR013083 -
Bisa08g0274 1052 SMART fyrn_3 457 501 IPR003888 GO:0005634
Bisa08g0274 1052 Pfam SET domain 930 1036 IPR001214 GO:0005515
Bisa08g0274 1052 ProSiteProfiles Zinc finger PHD-type profile. 614 665 IPR019787 -
Bisa08g0274 1052 Gene3D - 208 260 - -
Bisa08g0274 1052 Gene3D - 290 399 - -
Bisa08g0274 1052 CDD ePHD_ATX1_2_like 678 792 IPR041956 -
Bisa08g0274 1052 Pfam PWWP domain 302 389 IPR000313 -
Bisa08g0274 1052 ProSiteProfiles SET domain profile. 919 1037 IPR001214 GO:0005515
Bisa08g0274 1052 Pfam PHD-zinc-finger like domain 671 792 - -
Bisa08g0274 1052 CDD SET_SETD1-like 907 1052 - -
Bisa08g0274 1052 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 609 663 IPR013083 -
Bisa08g0274 1052 Gene3D SET domain 878 1044 IPR046341 -
Bisa08g0274 1052 MobiDBLite consensus disorder prediction 112 143 - -
Bisa08g0274 1052 ProSiteProfiles Extended PHD (ePHD) domain profile. 669 793 IPR034732 -
Bisa08g0274 1052 SMART set_7 919 1043 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g0274 Bisa-ChrBisa08 4955475 4969825 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g0274 592 763 C2H2 Transcription Factor Family AT3G14740 39.548 9.71e-27 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bisa08g0274 zf-HC5HC2H_2 1.8e-33 CL0390