Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g0240 ATGGCAGTTCTTATTGTTGATTGTGGAAAAGACAGCCAATTGCTTATGGTTACTATCCTCAAATTTCGTAGCATCATCTTTGCATTACAAGCCACAAAAACACAAACATTAAGCCCATGTGCAGCATTGAGATATCGTCATTTTGAGTCTGAAGGGGGTCACTTGGACAAAAGTTTGAAATTGTCACCAACCAGCTCACAAAGCAGAGTAGGAATTTTTTGGGATTTAGACAACAAACCACCCAAGTCATTGCCACCTTATGAAGCTGCCACTAAGCTGAAAGCAGCTGCGTCTCGCTTCGGTCTTGTTAGGCATATGGTGGCTTATGCAAATCGTCACACTTTCAGCAATGTCCCACAAGATGTCCGGGAACAAAGAAAAGCAAGAAAGTTGTTGAATCATTTAGAGAACAAGGGTGTGATCAAGCCAGCTGAGCCGTATCTTTGTCGAGTTTGTGGGAGAAAATTTTATACAAATGAGAAGCTCGTTAATCATTTCAAGCAAATTCATGAGCGCGAGCATATGAAAAGATTGAGCCAGATAGAGTCAGCAAAGGGCAGCAGGAGGGTGAAGTTGGTTGCTAAGTATTCAATGAAAATGGAGAAGTATAAGAACGCTGCAAGGGGCATTTTGACTCCCAAAGTGGGGTATGGTTTGGAAGATGGGCTAAAACGTGCAGGGTTTTGGGTCCGGACGGTGTTGGACAAACCGCAAGCTGCAGATCTTGCGTTGGAAGGTCACATGGTGGACATGATGGACCACAAGCGTGTTGAATGTGTGGTTCTTGTGTCGGATGATTCTGATTTTGTTAATGTGTTAAAGGAGGCAAAGTTACGATGTCTCAAAACTGTTATCATTGGGGATACCAATGATGGGACCTTGAAGAGGACTGCTGACACTGCCTTTTCGTGGGAGGAAATTCTGATGGGGAAGGCGAAGAAGGAGGCGGTATCGGTCGTTGAGAAGTGGAAGGATCGTGATATTTTAAAAAGACTGGAGTGGACATATGACCCAGAGGTGGAGAGAAAGAAATACTGTCTGGATGATATAGTTACTGAGGAAACTGAGGATGAGGATATTGAAGATATCTTTGATGAAGTTGGTGGTGCCTATAAAATCCAGGAAGACTCAAATGCTTGGTGGGAATTGGATACTGATGATGACTTAATAAATGAACACTCAGGAAAATGA 1191 0.4307 MAVLIVDCGKDSQLLMVTILKFRSIIFALQATKTQTLSPCAALRYRHFESEGGHLDKSLKLSPTSSQSRVGIFWDLDNKPPKSLPPYEAATKLKAAASRFGLVRHMVAYANRHTFSNVPQDVREQRKARKLLNHLENKGVIKPAEPYLCRVCGRKFYTNEKLVNHFKQIHEREHMKRLSQIESAKGSRRVKLVAKYSMKMEKYKNAARGILTPKVGYGLEDGLKRAGFWVRTVLDKPQAADLALEGHMVDMMDHKRVECVVLVSDDSDFVNVLKEAKLRCLKTVIIGDTNDGTLKRTADTAFSWEEILMGKAKKEAVSVVEKWKDRDILKRLEWTYDPEVERKKYCLDDIVTEETEDEDIEDIFDEVGGAYKIQEDSNAWWELDTDDDLINEHSGK 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g0240 396 SUPERFAMILY beta-beta-alpha zinc fingers 144 173 IPR036236 -
Bisa08g0240 396 CDD PIN_LabA-like 157 288 - -
Bisa08g0240 396 Gene3D - 62 309 - -
Bisa08g0240 396 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 44 390 - -
Bisa08g0240 396 Pfam NYN domain 221 300 IPR021139 GO:0004540
Bisa08g0240 396 ProSiteProfiles Zinc finger C2H2 type domain profile. 147 175 IPR013087 -
Bisa08g0240 396 ProSitePatterns Zinc finger C2H2 type domain signature. 149 170 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g0240 Bisa-ChrBisa08 4510226 4511416 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g0240 22 389 C2H2 Transcription Factor Family AT4G12240 57.407 2.56e-149 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bisa08g0240 NYN 1.3e-06 CL0280