Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bisa08g0230 | ATGGGGAATCACAATCTTAATGGATTGGGAGAAAATAAGTCCACCAGTGTTGATAATGTAAATCAGACAACAATGTCGGAACTGGCAAACACTGATCCCGAAGGTGTCGACGGAGTCCGCATGACATGGAACACGTGGCCCCGCACCAAGGTCGAAGCTAGCAAGTGCGTCATCCCTCTTGCTGCCACCATCTCCTTGATCCGTCCTCACCCTGACATTCCTCGCCTCCCTTATGCCCCTCTCCGCTGCAAGACCTGCTCCGCCGTTCTCAACCCCTTCTCTCGCGTCGATTTCATTGCCAAGATCTGGATCTGCCCGTTTTGCTATCAGCGCAATCATTTCCCTCCTCATTATAATGCGATCTCTGAGACCAATGTCCCCGGTGAGCTCTACCCCCAGTACACCACTGTTGAATACGCTCTTCCTATATCCACGAACCCCAATTCATTTGGGAACCCGAATCTCGATCCGGCTCATCAATTGCAGCCGTCCCCTGTTTTTGTTTTTTTGCTTGATACGTGTATGATCGAGGAGGAGATGGCGTTCGTGAAATCAGCACTTAGACAGGCAATTGAGCTGCTGCCTGATAATGCTCTTGTGGGTTTCGTGTCTTTTGGTACCCAGGTTCAAGTTCATGAATTGGGGTTCTCGGACATGTCCAAGGTTTATGTCTTTCGGGGAAATAAGGAGCTTCCAAAAGAACAGATTTTGGAGCAATTGGGTCTGGGTGCTTCTGGGAGGAGACAGGCCGGAGGATATCAAAAGCCGGTGCGGGGTGGATTCCCCACTTCAAGTGTCACGCGTTTTTTGCTGCCTGCGTCTGATTGTGAATACACTCTTAATTCGCTACTGGATGAATTGCAAACCGATCAATGGCCTGTTCAACCAGGCAGTCGTCCAGCTCGGTGCACTGGAGTGGCCTTAAGTGTTGCAGCAGGATTGCTTGGTGCCTGTGTTCCTGGCACTGGGGCTAGAATCATAGCTTTGGTCGGTGGTCCATGCACAGAAGGACCAGGCTCGATTGTCTCCAAAGATCTATCTGATCCTGTCCGTTCACATAAAGATCTTGATAAAGATGCAGCACCCTACTTCAAAAAAGCTGTCAAATTCTATGAGGGTCTTGCGAAGCAGCTGGTTAGCCAGGGTCATGTTTTAGATCTTTTTGCATCAGCTCTTGATCAGGTTGGAGTTGCAGAAATGAAAGTTGCAGTTGAAAGAACGGGTGGCCTTGTTGTTTTGGCTGAAAGTTTTGGTCATTCAGTATTCAAGGACTCTTTTAAGCGTGTTTTTGAGGATGGGGAGCAATCACTTGGTCTTTGTTTTAATGGAACTCTTGAGATCAATTGCTCCAAGGAAATAAAAGTTCAGGGTGTTATCGGACCTTGCACATCATTGGAAAAGAAAGGACCTTCTGTTGCTGATACTGTGATAGGAGAGGGGAATACAACAGCATGGAAGATGTGCGGCCTTGACAAGAGTACATGCTTGACAGTAATGTTTGATCTTTCATCAAGTGATCGTTCAAACACTCCAGGAGCTGTCAACCCACAGTTTTACCTACAATTCCTTACAAGTTACCAGGGTCCTGATGGTCAATTAGTGCTTCGAGTTACATCTGTAACTAGAAGATGGATAGATAGTGCTATTAGCTCTGAGGAATTGATACAAGGATTTGATCAAGAAACAGCTGCAGTGGTAATGGCTAGATATGCTTCTTTGAAAATGGAGACAGAGGAAGCATTTGATGCCACACGGTGGTTAGATCGTTACCTCATTCGATTCTGTTCTAAATTTGGGGATTACCGCAAGGATGATCCATCATCATTTACATTAAACCCAGCATTTTCATTGTTCCCTCAGTTTATGTTCAATCTGCGACGGTCACAATTTGTACAGGTTTTTAACAATAGCCCAGATGAAACTGCCTACTTCCGCATGTTGTTAAACAGGGAAAATATTAGCAATGCTGCTGTCATGATTCAACCATCTTTAATATCTTATTCCTTCAATTCTCTGCCTGCACCAGCATTGTTAGATGTGTCTTCCATTGCTGCTGACCGGATTCTCTTGCTAGATTCATATTTTATTGTTGTCATTTTTCATGGGATGACAATAGCTCAGTGGCGCAACATGGGATATCAATACCAACCAGAACACCAGGCATTTGCACAACTATTACAAGCTCCGCGTGACGATGCTCAAATTATCAATAGAGATCGTTTTCCTGTTCCTAGATTGGTAGTGTGCGATCAACACGGTTCCCAGGCTAGATTCCTATTAGCAAAGCTGAATCCCTCAGCAACATACAATAACGCGCACGACATGGCTGCTGGTTCAGATGTGATCTTCACTGATGATGTGAGCCTTCAAGTCTTCTTTGAGCATCTTCAAAAGCTGGCTGTGCAATCTTAA | 2412 | 0.4552 | MGNHNLNGLGENKSTSVDNVNQTTMSELANTDPEGVDGVRMTWNTWPRTKVEASKCVIPLAATISLIRPHPDIPRLPYAPLRCKTCSAVLNPFSRVDFIAKIWICPFCYQRNHFPPHYNAISETNVPGELYPQYTTVEYALPISTNPNSFGNPNLDPAHQLQPSPVFVFLLDTCMIEEEMAFVKSALRQAIELLPDNALVGFVSFGTQVQVHELGFSDMSKVYVFRGNKELPKEQILEQLGLGASGRRQAGGYQKPVRGGFPTSSVTRFLLPASDCEYTLNSLLDELQTDQWPVQPGSRPARCTGVALSVAAGLLGACVPGTGARIIALVGGPCTEGPGSIVSKDLSDPVRSHKDLDKDAAPYFKKAVKFYEGLAKQLVSQGHVLDLFASALDQVGVAEMKVAVERTGGLVVLAESFGHSVFKDSFKRVFEDGEQSLGLCFNGTLEINCSKEIKVQGVIGPCTSLEKKGPSVADTVIGEGNTTAWKMCGLDKSTCLTVMFDLSSSDRSNTPGAVNPQFYLQFLTSYQGPDGQLVLRVTSVTRRWIDSAISSEELIQGFDQETAAVVMARYASLKMETEEAFDATRWLDRYLIRFCSKFGDYRKDDPSSFTLNPAFSLFPQFMFNLRRSQFVQVFNNSPDETAYFRMLLNRENISNAAVMIQPSLISYSFNSLPAPALLDVSSIAADRILLLDSYFIVVIFHGMTIAQWRNMGYQYQPEHQAFAQLLQAPRDDAQIINRDRFPVPRLVVCDQHGSQARFLLAKLNPSATYNNAHDMAAGSDVIFTDDVSLQVFFEHLQKLAVQS | 803 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bisa08g0230 | 803 | Gene3D | - | 34 | 542 | - | - | |
| Bisa08g0230 | 803 | Pfam | Sec23/Sec24 helical domain | 559 | 655 | IPR006900 | GO:0006886|GO:0006888|GO:0030127 | |
| Bisa08g0230 | 803 | SUPERFAMILY | Zn-finger domain of Sec23/24 | 71 | 142 | IPR036174 | GO:0006886|GO:0006888|GO:0008270|GO:0030127 | |
| Bisa08g0230 | 803 | FunFam | Protein transport protein SEC23 | 556 | 677 | - | - | |
| Bisa08g0230 | 803 | Gene3D | Severin | 661 | 765 | IPR029006 | - | |
| Bisa08g0230 | 803 | FunFam | Protein transport protein SEC23 | 164 | 440 | - | - | |
| Bisa08g0230 | 803 | Pfam | Sec23/Sec24 zinc finger | 80 | 118 | IPR006895 | GO:0006886|GO:0006888|GO:0008270|GO:0030127 | |
| Bisa08g0230 | 803 | SUPERFAMILY | C-terminal, gelsolin-like domain of Sec23/24 | 662 | 802 | IPR036180 | - | |
| Bisa08g0230 | 803 | Gene3D | - | 77 | 136 | - | - | |
| Bisa08g0230 | 803 | SUPERFAMILY | Helical domain of Sec23/24 | 559 | 661 | IPR036175 | GO:0006886|GO:0006888|GO:0030127 | |
| Bisa08g0230 | 803 | Gene3D | Sec23/Sec24 helical domain | 556 | 800 | - | - | |
| Bisa08g0230 | 803 | CDD | Sec23_C | 651 | 771 | IPR037550 | GO:0030127|GO:0090114 | |
| Bisa08g0230 | 803 | SUPERFAMILY | beta-sandwich domain of Sec23/24 | 32 | 558 | - | - | |
| Bisa08g0230 | 803 | PANTHER | PROTEIN TRANSPORT PROTEIN SEC23 | 31 | 802 | IPR037364 | - | |
| Bisa08g0230 | 803 | FunFam | Protein transport protein SEC23 | 661 | 765 | - | - | |
| Bisa08g0230 | 803 | Pfam | Gelsolin repeat | 671 | 759 | IPR007123 | - | |
| Bisa08g0230 | 803 | Pfam | Sec23/Sec24 trunk domain | 164 | 430 | IPR006896 | GO:0006886|GO:0006888|GO:0030127 | |
| Bisa08g0230 | 803 | Gene3D | von Willebrand factor, type A domain | 164 | 439 | IPR036465 | - | |
| Bisa08g0230 | 803 | SUPERFAMILY | vWA-like | 165 | 431 | IPR036465 | - | |
| Bisa08g0230 | 803 | Pfam | Sec23/Sec24 beta-sandwich domain | 441 | 544 | IPR012990 | - | |
| Bisa08g0230 | 803 | FunFam | Protein transport protein SEC23 | 77 | 136 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bisa08g0230 | Bisa-ChrBisa08 | 4321959 | 4330597 | Wgd |