Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g0200 ATGCTTGGATATGGCCTGCAGGCCATGAGTTTCCACAGCTGTGAAAACCTGCAACTCCACGATCTAACTATCTTAAAAAGCCCAGGAGGTCATATTGGCGCCAATGGCTGCAATGGCTCTCGCATCTCTGGTCTGCGCCTTGTTTCACCTAAAGAGAGCCCTAACACTGATGGGCTTGGTGTCTCATCATCATCCAACGTTAGTATATGGAATTCTACCATGGAAGTTGGTGATGATTGCGTTGTCGTAAATGGAGGTTCATCTTTTATCAACATTACTGGTATTTTCTGTGGACCTGGTCATGGCATAAGCATTGGAAGCCTGGGGGGACATGGAGCCCATGACATAGTGGAAGAGGTGCATGTCCGAAATTGTACCTTCACTAGAAGTTCAAATGGAGCAAGAATCAAGACATGGCAGGGAGGATCTGGGTATGCGAGAAAGATCACATTTGAGGATATAGTGCTGGTAGATCCTCAGATCCCTGTGCTGATTGACCAGAACTATGTTGCTTTCTCTGTGCTGGATGCCCCCAAAGCAGTGGAAGTCAGTGACATTACTTTTAGGAATTTCCGAGGAACTTCAGCATTTGAGGAAGCAATCCAATTAAAATGCGACAAAGTGATAGGATGCACCAACATAGTGTTGGATCAGATTCAAATAACATCAGCAGTTCCTGGGAAGAACACATATGCTGTGTGTGAAAATGCTCATGGGACAAGTTCTCCATCCAATGTTCCTCAAGTTGCATGCCTTTTAAAGTGA 765 0.451 MLGYGLQAMSFHSCENLQLHDLTILKSPGGHIGANGCNGSRISGLRLVSPKESPNTDGLGVSSSSNVSIWNSTMEVGDDCVVVNGGSSFINITGIFCGPGHGISIGSLGGHGAHDIVEEVHVRNCTFTRSSNGARIKTWQGGSGYARKITFEDIVLVDPQIPVLIDQNYVAFSVLDAPKAVEVSDITFRNFRGTSAFEEAIQLKCDKVIGCTNIVLDQIQITSAVPGKNTYAVCENAHGTSSPSNVPQVACLLK 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g0200 254 Gene3D - 3 251 IPR012334 -
Bisa08g0200 254 Pfam Glycosyl hydrolases family 28 8 239 IPR000743 GO:0004650|GO:0005975
Bisa08g0200 254 ProSitePatterns Polygalacturonase active site. 94 107 IPR000743 GO:0004650|GO:0005975
Bisa08g0200 254 SUPERFAMILY Pectin lyase-like 8 251 IPR011050 -
Bisa08g0200 254 PANTHER - 8 240 - -
Bisa08g0200 254 SMART pbh1 64 85 IPR006626 -
Bisa08g0200 254 SMART pbh1 178 205 IPR006626 -
Bisa08g0200 254 SMART pbh1 37 63 IPR006626 -
Bisa08g0200 254 SMART pbh1 117 138 IPR006626 -
Bisa08g0200 254 SMART pbh1 87 107 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g0200 Bisa-ChrBisa08 3698288 3699737 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g0200 8 246 Glycoside Hydrolase AT4G35670 47.699 4.22e-76 231