Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g0122 ATGCGAACTTCATGGGCAGATTTGGCTGCAAACTCTGCAGCTGAAAGTGCAGGTCCTGTCTCTTCTGCCAACAATGCTGGAACTGGTAATTCTTCAGCTCCTTCACGCTCTACTTATGTTCCTCCACATCTTAGGAACCGTCCGCCCTCTGCAGAACCTCCTGCTTCAGCATATAGTGGCGCTACTTCTGGTCCTGGTACTTGGGGTGGTACTAATAATGCTGGACCAGGTAGGGCCATGCCCAGAAATGATAATCGTTCAGGGTATGGTGGCAGTAGCCGTGGTAGTGGATGGGGAAACAGGGGTGGTGGTTGGGACCGTGGCAAGGAGCGGGAAGCTAATCCCTTTGCCAACATGGATGATGCAGAAGAGGTTCTTAGTGAGCAGGAGAATACAGGAATTAATTTTGATGCATATGAAGACATTCCTGTGGAGACCAGTGGTGGCAATGTGCCCCCACCCGTGAATACATTTGCAGAGATTGACTTGGGTGAAGCACTTAATCAGAATATAAGAAGGTGCAAATATGTCAAGCCAACGCCTGTTCAGCGACATGCCATACCAATATCCCTTGCTGGACGGGATTTGATGGCTTGCGCACAGACTGGTTCTGGAAAGACAGCTGCTTTTTGTTTCCCAATTATCAGTGGAATTATGAGGGGCGAGCCTGTACAGAGGCCACCTCGTGGGGTGCGTACAGTATATCCACTTGCTCTTGTTCTCTCACCGACTAGGGAGCTGTCAATGCAAATACATGAAGAAGCGAGGAAGTTTTCATACCAAACTGGGGTTAGGGTGGTTGTTGTGTATGGTGGTGCACCAATAAATCAGCAGCTGCGAGATCTTGAGAGAGGAGTGGATATTCTTGTTGCAACTCCTGGAAGGCTGGTGGATTTGCTGGAGAGGGCTAGAGTTTCACTGCAGATGATAAGATATTTGGCCTTGGATGAGGCAGATCGGATGCTGGATATGGGCTTTGAGCCTCAAATAAGGAAGATTGTAGAACAGATGGACATGCCTCCACCAGGTGCCAGACAGACTATGCTGTTCAGTGCCACTTTTCCAAAAGAGATACAGAGATTGGCCTCTGATTTCCTTTCAAAATATGTTTTTCTGGCTGTTGGAAGAGTTGGATCAAGTACTGATTTGATTGTCCAAAGAGTTGAATATGTTCAGGAGTCAGACAAGAGAAGTCACCTCATGGACCTTCTTCACGCGCAGAGGGCAAATGGTGTACAAGGAAAGCAAGCGTTGACCTTAGTCTTTGTGGAGACAAAGAAGGGAGCTGATTCACTGGAAAACTGGTTATGTATGAATGGTTTCCCAGCTACCACTATTCATGGGGACAGGACACAACAGGAAAGAGAAATGGCATTAAGGTCATTTAAAAGTGGCAGCACCCCCATATTGGTTGCCACTGATGTGGCTGCTCGTGGTCTTGATATTCCTCATGTTGCCCACGTGGTCAACTTTGATCTGCCAAATGATATTGATGATTATGTACACCGTATTGGAAGGACAGGCCGAGCAGGGAAGAAAGGTCTGGCCACTGCATTCTTTAATGACAACAATGCATCAATCGCAAGGGCTCTAGCAGATCTGATGCAAGAAGCAAATCAAGAAGTGCCTGCTTGGCTCTCACGGTATGCTGCTCGATCTTCTTTTGGAGGAAGGAACCGTCGATCAGGTGGAGGCCGGTTTGGTGGTCGTGACTTCCGAAGAGACAGCTATAACAGTAGGGGTGGTTCTGATTATTACAGTGCAGGAAATAGCAGTGGTGGGTATGGGGCTTCTGGTGGGTATGCTGGAGGATATGGTCCTGGTGTAACCAGCGCATGGGACTGA 1845 0.4813 MRTSWADLAANSAAESAGPVSSANNAGTGNSSAPSRSTYVPPHLRNRPPSAEPPASAYSGATSGPGTWGGTNNAGPGRAMPRNDNRSGYGGSSRGSGWGNRGGGWDRGKEREANPFANMDDAEEVLSEQENTGINFDAYEDIPVETSGGNVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGEPVQRPPRGVRTVYPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVVYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGARQTMLFSATFPKEIQRLASDFLSKYVFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADSLENWLCMNGFPATTIHGDRTQQEREMALRSFKSGSTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNASIARALADLMQEANQEVPAWLSRYAARSSFGGRNRRSGGGRFGGRDFRRDSYNSRGGSDYYSAGNSSGGYGASGGYAGGYGPGVTSAWD 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g0122 614 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 156 184 IPR014014 GO:0003724
Bisa08g0122 614 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 237 529 IPR027417 -
Bisa08g0122 614 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 124 550 - -
Bisa08g0122 614 Pfam DEAD/DEAH box helicase 180 361 IPR011545 GO:0003676|GO:0005524
Bisa08g0122 614 Pfam Helicase conserved C-terminal domain 396 511 IPR001650 -
Bisa08g0122 614 SMART ultradead3 175 387 IPR014001 -
Bisa08g0122 614 FunFam ATP-dependent RNA helicase RhlB 375 554 - -
Bisa08g0122 614 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 187 372 IPR014001 -
Bisa08g0122 614 MobiDBLite consensus disorder prediction 1 39 - -
Bisa08g0122 614 MobiDBLite consensus disorder prediction 1 117 - -
Bisa08g0122 614 FunFam Probable ATP-dependent RNA helicase DDX4 119 374 - -
Bisa08g0122 614 CDD DEADc_DDX3_DDX4 157 378 IPR044763 GO:0003724|GO:0005524
Bisa08g0122 614 SMART helicmild6 430 511 IPR001650 -
Bisa08g0122 614 CDD SF2_C_DEAD 384 520 - -
Bisa08g0122 614 Gene3D - 113 374 IPR027417 -
Bisa08g0122 614 Gene3D - 375 554 IPR027417 -
Bisa08g0122 614 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 383 550 IPR001650 -
Bisa08g0122 614 MobiDBLite consensus disorder prediction 56 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g0122 Bisa-ChrBisa08 1621206 1625858 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g0122 145 543 Eukaryotic Initiation Factors Gene Family AT3G19760 32.500 1.38e-62 211