Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bisa08g0022 | ATGCAGCAATTTTGTTCCCTATTGAATGGGAATGTGACACTGTTTCTTCAAAGGTTTGTCCCTGTGAAGAGAACCTTTGCTACTAAACTCAATGTGCCTGTTGTGTCTCCTGAAAGCAGGAATATGCAGGCCAGTGATAGGTTTAACATCAATTCCCAACTTGAGCACCTCCAAGCTAAATATGTTGGAACTGGGCATGCAGATTTAAATAGATTTGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCCTCATATGTTGGTCACTATCCCATACTGGCATACTTTGCTATTGCTGAAAATGAATCAATTGGAAGGGAATGCTACAGCTTCATGCAGTTTGAAGACGCAATTTCATTCTTTGCTCTCATGAAGAGGTTGAATGTTAAGCCTGATGGGCTAACATTTCCATTCGTGCTCAAATCCGCCTCGGCTTTGCTCGTGATTTCGTTGCTGGATATGTACATTAAAGTTGAGAAGATGGGTTCTGCATTGAAGGTGTTCGATGAAACGCTTGAGACTGTGAAGTCTTGTGCAAAAATCGGTGCACTAGAGGCTGGAATACGAATTGACAATTATCTTTCAAATATCCGTTTCTTCATTACTAAAGTAATCGGAAATGCTCTGGTGGATATGTATGCCAAATGTGGGAACATGGAGGCTGCAAGTGAAGTGTTCGCTGACATGAAACAGAACGACCGTCTAATGCTATGGGGTTGGGCAATCCATGGCCACCATGAGAATTGTATTTAGCATAGAGAACGGATAGAGAAGGCAAAGGAGAAGGAACGATTGCAGAAGCAAAAAGAGGACAGGCAGAAAGAGGAGGCTGAGAAGAAAGCTAATGAAGATAGATCTAAACTGGATGGTCTGGACATGGGGCATACAAATGAAGACGTGCAGCAATCCGATGGTGAAGGCAATGATATGGCAAGTAGCCATGACAAAATTGGTCCTTTAGATGGTTCTCCTACACATCAGGATGCAGTAGCAGACAAGAATTTGGCAGATGTACTTGATAATGATTATAGAGCCACAAATAGTCCTGGAAGTGAAGGATCTTTAGCTAATGGAGTGAAAGAGAATGCAAGGGAAGATAAGGAAGCATCTGCTGTTGAATCTGAAACTGATGTCAAGGCTGGAAGGAAGGAGTCTTCTGATGAAGTCACTAATACAGGAAGTGTTCTGCCTGAAAATAGTAATACTGAGGGATTGTCAAAAGGAGAGTTGGGTCGGCTTGCTGCTTCTCGTTGGACGGGAGAAAATCCTGGTAAGCAAAGTACTGAAGTTGATGCAACAATTCATAAGGCTGATAAAGATCATGAAGATCTTCCAAAGGAGACAGATCATGAGGATGATGAAGGCTATGCATCTGAAACTGATGATGAGAGACGCAGATATGATGATATAGATGTAGAAGATGAAGTGGATGACGACTTTCAAGAGGAGGAACATGATGACCTTAGTTCCTCCTACAAATCTGACACTGATACTGCACCATATTTATCAGATGATGGTGCAGCAAATAATCCTTCTTGGTTAGAGAAAATACAGAAAACTGTCCGAAACATTTTTCAGGCTGTTAATCTATTCCAGACTCCAGTCAACCAGTCAAATGCTGCACGTGTGCGCAAGGAGTATGATGAGTCAAGTACCAAATTGTCTAAATTACAGTCAAGAATATATACTTTGAGGGAAAAGCTAAAACGTGATTTTGGTCCAGAGATGGAGTTCTATTCATTCTATGATTGCTGTTTTGAGAGCAAGCAGAACAAGTCACATACTCTATCCTCTGCTGCTTTATTTTCTACTTGTTCTGTATTTGGACATCTTGTGTACACTTACAAAGTCTGCCCTTTTAAGGAGGCTTCTCCGGAGGAGGACTATAGCAACACGCGTTTGGGGCGCTGGGACAAATTTGAGGACTCTTACAGAGTTATGGTTTTCTCTAACGGTGATAAATGCTGGAATGGGCCTGATAGGAGTTTGAAGGCCAGGCTAAAATGTGGGTTGAAAAATGAGATAATTGATGTAGATGAACCAAGCGTTGCGAGTATGCAGCTTTATTGTCTACCCCAGCCCTTTGCAAAGAGGAAAAGCTTAAGGGACTCGTGCTATTGCATGATAACAAGCTCTGTCCTAACAATAGAATAA | 2154 | 0.4183 | MQQFCSLLNGNVTLFLQRFVPVKRTFATKLNVPVVSPESRNMQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRECYSFMQFEDAISFFALMKRLNVKPDGLTFPFVLKSASALLVISLLDMYIKVEKMGSALKVFDETLETVKSCAKIGALEAGIRIDNYLSNIRFFITKVIGNALVDMYAKCGNMEAASEVFADMKQNDRLMLWGWAIHGHHENCIXHRERIEKAKEKERLQKQKEDRQKEEAEKKANEDRSKLDGLDMGHTNEDVQQSDGEGNDMASSHDKIGPLDGSPTHQDAVADKNLADVLDNDYRATNSPGSEGSLANGVKENAREDKEASAVESETDVKAGRKESSDEVTNTGSVLPENSNTEGLSKGELGRLAASRWTGENPGKQSTEVDATIHKADKDHEDLPKETDHEDDEGYASETDDERRRYDDIDVEDEVDDDFQEEEHDDLSSSYKSDTDTAPYLSDDGAANNPSWLEKIQKTVRNIFQAVNLFQTPVNQSNAARVRKEYDESSTKLSKLQSRIYTLREKLKRDFGPEMEFYSFYDCCFESKQNKSHTLSSAALFSTCSVFGHLVYTYKVCPFKEASPEEDYSNTRLGRWDKFEDSYRVMVFSNGDKCWNGPDRSLKARLKCGLKNEIIDVDEPSVASMQLYCLPQPFAKRKSLRDSCYCMITSSVLTIE | 717 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bisa08g0022 | 717 | Gene3D | - | 599 | 689 | IPR009011 | - | |
| Bisa08g0022 | 717 | NCBIfam | pentatricopeptide repeat | 207 | 232 | IPR002885 | - | |
| Bisa08g0022 | 717 | MobiDBLite | consensus disorder prediction | 387 | 406 | - | - | |
| Bisa08g0022 | 717 | Coils | Coil | 540 | 560 | - | - | |
| Bisa08g0022 | 717 | MobiDBLite | consensus disorder prediction | 260 | 509 | - | - | |
| Bisa08g0022 | 717 | PANTHER | N-LINKED OLIGOSACCHARIDE PROCESSING | 251 | 686 | IPR039794 | - | |
| Bisa08g0022 | 717 | MobiDBLite | consensus disorder prediction | 431 | 471 | - | - | |
| Bisa08g0022 | 717 | Pfam | Splicing factor 3B subunit 10 (SF3b10) | 46 | 112 | IPR009846 | - | |
| Bisa08g0022 | 717 | ProSiteProfiles | MRH domain profile. | 603 | 717 | IPR044865 | - | |
| Bisa08g0022 | 717 | Pfam | PPR repeat | 207 | 232 | IPR002885 | - | |
| Bisa08g0022 | 717 | Coils | Coil | 252 | 287 | - | - | |
| Bisa08g0022 | 717 | Pfam | Glucosidase II beta subunit-like protein | 545 | 685 | IPR036607 | - | |
| Bisa08g0022 | 717 | Gene3D | Tetratricopeptide repeat domain | 93 | 311 | IPR011990 | GO:0005515 | |
| Bisa08g0022 | 717 | MobiDBLite | consensus disorder prediction | 359 | 386 | - | - | |
| Bisa08g0022 | 717 | MobiDBLite | consensus disorder prediction | 260 | 294 | - | - | |
| Bisa08g0022 | 717 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 202 | 236 | IPR002885 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bisa08g0022 | Bisa-ChrBisa08 | 392647 | 405428 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bisa08g0022 | 308 | 682 | Calmodulin-binding Proteins | AT5G56360 | 49.479 | 2.48e-86 | 283 |