Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g0018 ATGAGAGAAAACGGTCCGGCTTCTCTAGTATATCTATGTTCTTATATCTTGATTTCCAATTTACCTAGCTTCCAACAAATTTGTTTCCTTGTGCAAGTTGTTGGCTCTACGAAAAGTAAAGAAAGAGGAATAGAGAAGGCTAGAGAGAAAATCAAGCAGAAGTTGGAAGAAGACAAGGTTTATACATTTTCATACCATTTGATTCTTTATTGTATCTCCTTCTTTCAGTTATCATTCTGGTCTAATTCTGAAAGAAGGCGAAGACTTGGATTGCCTCCTGAAGAACCACCAGCTCCCAAACCTTCACCTGTTGTGGAGGAGAAAAAGAGTTCATTGCCAGTTCGGCCTGCTACAAAAGCTGAACAAATGCGAGAGTGCTTGCGCTTTCTCAAGCAGATCCACAAGGCGATTCCTACTGCTATCTACCTCCCCAGTAAGTCTCCTTCTTGCTCATCCGAAACCCATTTGATTTCTCTCATTCATGCCTCCAACACTAGCCGCCAACTCCGAGAAATTCATGCCCAGATTCTCGTTTGCGATCTCTTCTCAAGCAGTCGGGTTGCAACCCAGTTCATATCTTCATGTTCCCTCCTTAAATCCTTTGATGACGCAATTTCATTCTTTGCTCTCATGAAGAGGTTGAATGTTAAGCCCCATGGGCTAACATTTCCATTCGTGCTCAAATCCGCCTCGGCTTTGCTCGTGAGTGAGCTGGGTGACTGTCTTCATAGCATAATTCTGAAGCTTGGGCAGGAATTTGATTCATTTGTTCGAGTTTCGTTGCTGGATATGTACGTTAAAGTTGAGAAGATCGGTTTTGCATTGAAGATGTTCAATGAAACGCCTGAGACTGTGAAGCGTGGGAGCATATTGTTGTGGAATATTTCTATTAATGGGTGTTGTAAACTTGGAGATTTGGACAAGGCCAGAGAACTTTTTGAAGCTATGCCTGAAAGAAGTATTGGTCCTTGGAATACTTTGATAAATGGGTTTGCAAGAAATGGTGATATGAATGGCACAAGAGAGCTATTTGGTCATATTCACGAGAAGAATGTTGTCGTGATAAAAGCTTGTGCAAAAATCGGTGCACTAGAGGCTGGAAAACGAATTCACAATTATCTTTCAAATATCCAACGACCGTCTAATGCTATGGGGTTGGGCAATCCATGGCCAGCATGGGCAAGTTCTGCAGTACTTCAGATAGATGAGGAGCCTTTTCTTGATCTCTCCTTGCCAGTTCCTTCTAAGAAACCACCACCTAAGAAGGCCCAACTAGCAACTCGATCCAAGAAAACAAAACTTCCCATGAAGAAAGATGGAAAGACTCGGGTGAAAGTTAGCAGAGATGCTGGTCCCCTACCTGTTCAAAGTCTAACAGCCCAGTTACCAAGCTATGAATCATTCTGCACTGTGCAATCTAACATCAAGAAGCCTCGACTTCACCAAAATTTCCAAACCGTTCAAGACTCTGAACACATGCAAGGCTTTGACAATGGTGCTGAGAAAAAATTGACTTCATTGGGTGATTTTACATGGTTGGATTACGTGGAAGCAGGAACCAATACAGATGAATGTGGTTTCCTTTCTGAGGATAAGGATGTTGTACTGATGCGGGATGCTGAGAGCAAAGACAAATCTTTAAATGATATCCCTGTACAGGCTTGCTGTGTATCTAGTGCTCCTCTACTGGAGAAATCATGGGAAGAGAAGGATGTTGTCACCTCATCAGTTATGGGCTGTGGGCAAGATGACTTGGGGTTTATTGGCTTTGGTGAGTTATTTAACGAGCCTGAAGCTGTTGCTGGTCTTGCTCCCAGACCTTCGTATGGTGAGGTTGAAGCAGGTTTTATAGCTGGAAATAGCAGTGAGTCTGACCCAGATGAAGTAGATGACACAGATTCACCAGTCTCTGTAGATACTTGCTTGGCTCACTTTATAAAACCTGAGCTTCTTTCCAATCAAAATGCTTGGCATTGTGAAAACTGTTCAAAAATTCTCCAACAACAGAAACTGAAAGTAAAAATGGAGAAAAGGCTATCCAATGGAGAAGAGACTAGAAGTTATGATGATCTTTTGCATACAACTAACTCTTGTCCTGCTATGGCAAGAAGCCTTGGTAATGGGAATATTAAAAATGAAAAATTCAGAGAAAGTTCAGCTTCACATGTTAAATGTTGCACAGAGCTTGAAAATGGTCAAACAGATTAG 2208 0.4194 MRENGPASLVYLCSYILISNLPSFQQICFLVQVVGSTKSKERGIEKAREKIKQKLEEDKVYTFSYHLILYCISFFQLSFWSNSERRRRLGLPPEEPPAPKPSPVVEEKKSSLPVRPATKAEQMRECLRFLKQIHKAIPTAIYLPSKSPSCSSETHLISLIHASNTSRQLREIHAQILVCDLFSSSRVATQFISSCSLLKSFDDAISFFALMKRLNVKPHGLTFPFVLKSASALLVSELGDCLHSIILKLGQEFDSFVRVSLLDMYVKVEKIGFALKMFNETPETVKRGSILLWNISINGCCKLGDLDKARELFEAMPERSIGPWNTLINGFARNGDMNGTRELFGHIHEKNVVVIKACAKIGALEAGKRIHNYLSNIQRPSNAMGLGNPWPAWASSAVLQIDEEPFLDLSLPVPSKKPPPKKAQLATRSKKTKLPMKKDGKTRVKVSRDAGPLPVQSLTAQLPSYESFCTVQSNIKKPRLHQNFQTVQDSEHMQGFDNGAEKKLTSLGDFTWLDYVEAGTNTDECGFLSEDKDVVLMRDAESKDKSLNDIPVQACCVSSAPLLEKSWEEKDVVTSSVMGCGQDDLGFIGFGELFNEPEAVAGLAPRPSYGEVEAGFIAGNSSESDPDEVDDTDSPVSVDTCLAHFIKPELLSNQNAWHCENCSKILQQQKLKVKMEKRLSNGEETRSYDDLLHTTNSCPAMARSLGNGNIKNEKFRESSASHVKCCTELENGQTD 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g0018 735 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 125 375 IPR046960 GO:0003723|GO:0009451
Bisa08g0018 735 MobiDBLite consensus disorder prediction 88 111 - -
Bisa08g0018 735 MobiDBLite consensus disorder prediction 411 446 - -
Bisa08g0018 735 Coils Coil 37 57 - -
Bisa08g0018 735 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 289 323 IPR002885 -
Bisa08g0018 735 SUPERFAMILY Cysteine proteinases 402 670 IPR038765 -
Bisa08g0018 735 Gene3D Cysteine proteinases 396 683 - -
Bisa08g0018 735 NCBIfam pentatricopeptide repeat 293 323 IPR002885 -
Bisa08g0018 735 NCBIfam pentatricopeptide repeat 324 353 IPR002885 -
Bisa08g0018 735 Pfam PPR repeat 293 320 IPR002885 -
Bisa08g0018 735 Pfam PPR repeat 324 352 IPR002885 -
Bisa08g0018 735 Gene3D Tetratricopeptide repeat domain 117 288 IPR011990 GO:0005515
Bisa08g0018 735 Gene3D Tetratricopeptide repeat domain 289 387 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g0018 Bisa-ChrBisa08 355103 363830 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g0018 51 135 C2H2 Transcription Factor Family AT1G04850 56.818 3.17e-18 84.7