Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g3402 ATGCTCTTCCTCTCACAAAAGATTCCCCATTGGCCTGCCACGAGAAAGTTGTTGTCGATTCAGTTAGATATCCATTTGGTTCGAGGTCCCCGCGTACCTAGCTCTTTTTGTCCCTGGAGTCTCTCTGTCTTCTTTGAAGCTCTAGGGTTTGCTGGTTTTGTGCCCCCTCTCCTGCATTTCACCATAATAGCTCAACTGTCAGCGCTTCAACGGCTGAATTTGTTTGGGGACCACGATGCTGTTACGGGGTTAAAGTGTGTTGAGCTCATGCTGTTTAATGTAGACAGTCATAACTTCAGAATTGAATTTGGTGATCAGATTTCCATTTGTTTGACGGTTAACATATCTTTTGCAATATCCTTTTATAGTGAAAGAGAAAATAACTCAAATTTATCTTCTATTTTGTGCCTAAAGCAGAAAGGTGATGCAATGAAGCAGTCTTTTGATATTTCAGCTTCAGGTCCTACCAAGATTCCCTCTATAAATATACTTAAAGAGGTAGGGGGCAGTGCTTGGGAGGTTATACGTGGATTTGATGCCTACCACGCCTCATCTGATGCTAGCCTTTTTTCTAGCTCACTACCTGTTTTGCCACATGAAAAGTTGAACTTGAATGACACTGAAAATGAGTATCAATCTGTGGATGATATCTCATCCGGTTTTAAAAAGCTCCACCATGATTTAGAGGTTAATGAAGCACTTGAAGATGCTAATATTCATGCAATTGGAACCATGCTTCCAGATGATGAGGAGGAGCTTTTAGCTGGCATAACAGATGATTTTGATCTAAGTGGGTTGCCTGGATCCCTAGAGGACTTGGAAGAGTATGATTTTTTTGGTAGTGGCGGGGGTATGGAACTGGAAACTGATCCGCACGAAAGTCTTAGTGTGGGAATGTCAAAATTAAGTTTCTCTGACAGTACAATTGGCAATGGTTTGCCCCATTATTCTTTTCCTAATGGTGTGGGAACTGTTGCTGGAGAACATCCATATGGGGAGCATCCTTCTCGAACATTATTTGTTCGAAATATTAATAGTAATGTGGAAGATTCAGAGTTGAGAGCCCTTTTTGAGCAATATGGTGATATTAGGACCCTCTATACTGCATGCAAACATCGGGGGTTTGTAATGATATCCTACTATGATATCCGTGCTGCTAGAACAGCTATGCGTGCCTTGCAAAACAAACCACTGCGGCGAAGGAAGCTTGACATTCACTTCTCAATACCAAAGGATAATCCATCAGACAAGGATATAAATCAAGGAACCTTGGTGGTTTTTAATTTGGATCCATCTGTTTCAAATGAAGATCTTCGTCAAATATTTGGGGCATATGGCGAGGTCAAAGAGATAAGGGAAACGCCTCACAAGAGGCATCATAAATTTATTGAATTTTATGATGTCAGAGCTGCAGAAGCAGCACTTAAATCATTAAACAGGAGTGACATAGCTGGCAAACGCATAAAGCTGGAACCTAGTCGTCCGGGTGGAGCTCGTCGAAATTTGATGCTCCAACTAAATCAAGACCTTGATCAAGATGATGCTCGGAGTTTCCGTCATCAAGTGGGTTCACCCATAGCTAACTCTCCACCTGGTAACTGGTTGCAGTTTAACAGCCCTGTTGAACATAAGTCAATGCAGTCTATTAGTAATTCTCCTGGTTCTAGGATTATGAGCCCAACAACTGGCAACCATTTACCAGGGTTAGCTTCAATCTTGCAACCTCAGGTATCAAACACTGTAAAGGGTGCTGCTGTCGGTAAAGACTTAGGAAGGAATAGTCATGGAGAGCACATATTTAGTGGTACCAATTCATCACATGGAGCTCCATTTCAATCGCATTCACTTCCAGAACCAACATTCAGCCAATATCATGGAGCTTTGTCCGCTTTTGTTCCATCAACTTCCAATGGATCCTCGGTGGAAACCTTGTCCGGACCACAGTTTCTTTGGGGAAGTTCAAGCCTGTACTCTGAGCACACCAAACCTTCACCTTGGCCAAGACCATCCATGGGGCTTCCATTTACATCAAATGGAAAGGGCCAAGCCTTCCCGTACTCGGGTCAGAATAGTTCCTTTGTTGGTTCATCCCAGCATCATCTTCATCATCATGTTGGCTCTGCTCCATCAGGTATTCCATTTGAGAGACACTTTGGTTTTCTTCCTGAATCACCGGAAACATCATTCATGAATCATGTTAGTTATGGAGGCATAAATGTGGGGCACAATGATGGAAATTACATGGTTAACATGGGTGGCTCTGTTAATGCTGGCATTAATATACCAAGGAATATGTCTGAAAATGTTCAATCGAACTTTAGAATGAGATCTTCTCCTAGGCTTAGCCCTGTATTTTTGGGTAGTGGTCCTTACCCGGGTCTGCCACCTACCACTATGGAGAGTTTGACTGACCGTGGACGGAGTAGACGAGTAGAGAACAATGGTAACCAAGTTGATAGTAAGAAGCAATTTCTGCTTGACTTGGATAAGATAAAATGCGGCGAAGATACAAGGACTACCTTAATGATAAAGAATATCCCAAACAAATACACCTCAAAAATGTTACTAGCTGCCATTGACGAAAATCATAGGGGTACCTATGATTTTCTTTATCTGCCTATTGATTTTAAGAATAAATGCAATGTGGGCTATGCATTTATCAACATGCTGTCACCCTCACTTATTATTCCGTTCTACGAGACATTCAATGGGAAGAAGTGGGAGAAGTTTAACAGTGAGAAAGTTGCTTCTTTGGCATATGCTCGAATCCAAGGAAAGGCTGCCCTTGTAAGTCACTTCCAAAATTCAAGTTTGATGAATGAAGACAAGCGATGCCGCCCTATTCTCTTCCATTCGGAGGGTCCTGAAGCTGGTGATCAGATCGTACAAGAGCATCTTCCCTCCAACAATCTCAATATCCATGTCCTTAGGTCAAGTGAGTCACATTCAATTGACTCTACTGGAAGCCCCCCCCAAGGATAA 2982 0.4235 MLFLSQKIPHWPATRKLLSIQLDIHLVRGPRVPSSFCPWSLSVFFEALGFAGFVPPLLHFTIIAQLSALQRLNLFGDHDAVTGLKCVELMLFNVDSHNFRIEFGDQISICLTVNISFAISFYSERENNSNLSSILCLKQKGDAMKQSFDISASGPTKIPSINILKEVGGSAWEVIRGFDAYHASSDASLFSSSLPVLPHEKLNLNDTENEYQSVDDISSGFKKLHHDLEVNEALEDANIHAIGTMLPDDEEELLAGITDDFDLSGLPGSLEDLEEYDFFGSGGGMELETDPHESLSVGMSKLSFSDSTIGNGLPHYSFPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQDLDQDDARSFRHQVGSPIANSPPGNWLQFNSPVEHKSMQSISNSPGSRIMSPTTGNHLPGLASILQPQVSNTVKGAAVGKDLGRNSHGEHIFSGTNSSHGAPFQSHSLPEPTFSQYHGALSAFVPSTSNGSSVETLSGPQFLWGSSSLYSEHTKPSPWPRPSMGLPFTSNGKGQAFPYSGQNSSFVGSSQHHLHHHVGSAPSGIPFERHFGFLPESPETSFMNHVSYGGINVGHNDGNYMVNMGGSVNAGINIPRNMSENVQSNFRMRSSPRLSPVFLGSGPYPGLPPTTMESLTDRGRSRRVENNGNQVDSKKQFLLDLDKIKCGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMLSPSLIIPFYETFNGKKWEKFNSEKVASLAYARIQGKAALVSHFQNSSLMNEDKRCRPILFHSEGPEAGDQIVQEHLPSNNLNIHVLRSSESHSIDSTGSPPQG 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g3402 993 SMART rrm1_1 338 406 IPR000504 GO:0003723
Bisa07g3402 993 SMART rrm1_1 423 491 IPR000504 GO:0003723
Bisa07g3402 993 SMART rrm1_1 840 916 IPR000504 GO:0003723
Bisa07g3402 993 FunFam Protein MEI2-like 1 421 516 - -
Bisa07g3402 993 SUPERFAMILY RNA-binding domain, RBD 334 497 IPR035979 GO:0003676
Bisa07g3402 993 SUPERFAMILY RNA-binding domain, RBD 840 925 IPR035979 GO:0003676
Bisa07g3402 993 PANTHER RNA RECOGNITION MOTIF-CONTAINING 185 956 - -
Bisa07g3402 993 FunFam MEI2-like protein 5 isoform 2 326 420 - -
Bisa07g3402 993 Pfam RNA recognition motif 2 838 934 IPR007201 -
Bisa07g3402 993 CDD RRM2_MEI2_like 421 491 - -
Bisa07g3402 993 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 339 403 IPR000504 GO:0003723
Bisa07g3402 993 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 424 489 IPR000504 GO:0003723
Bisa07g3402 993 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 422 495 IPR000504 GO:0003723
Bisa07g3402 993 Gene3D - 421 518 IPR012677 -
Bisa07g3402 993 CDD RRM3_MEI2_like 841 926 IPR034454 -
Bisa07g3402 993 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 337 410 IPR000504 GO:0003723
Bisa07g3402 993 Gene3D - 326 420 IPR012677 -
Bisa07g3402 993 CDD RRM1_MEI2_like 336 412 IPR034453 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g3402 Bisa-ChrBisa07 69287610 69298007 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g3402 332 530 Eukaryotic Initiation Factors Gene Family AT1G71770 25.333 2.06e-06 49.7