Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g3382 ATGGGTCGCCGGAAGATCGAGATGGAGATGGTGAAGGACGCAGGGTCGAGGCAGGTGACGTTCTCGAAGCGCCGCAATGGGCTCTTCAAGAAAGCGAACGAGCTAGCGATCCTGTGCGGTGCGGAGCTAGCCATTGTCGTGTTCTCGCCAGGTGGCAAGCCTTTCTCCTTCGGCCATCCGTCCGTCGATGCGGTGGCTCACAGGTTTCTGCAGCAGCGCGAGGGCGCGCCGGAATCAGGTGGGTCCTCTAATTGCTCTTCGAAGGATGGTTGTGTAAAAGCGGAGAAGCTGAAGAAGCGGCTGGTGAATCTGACGAAGCAGCTTGAGGCGGAGAAGAAGAAGGGGGAGATGCTGGAGAGGGCCCTGGAGGAGAAGAGGCTCGCTTGTGGGTTTGGGCCTGGGGCAGACGATGTGGGTAAGCTTGAGAAGACGAAGAGGAGGCTGGAAAAGTTTCGGGAGGAAGTGAAGGTGCGGGCGAGAGAAATGGAGGCGGCGGCGTCGTTGGTGATGCTAGCGGCAAAGAAAGAGAAATGCTAA 537 0.5829 MGRRKIEMEMVKDAGSRQVTFSKRRNGLFKKANELAILCGAELAIVVFSPGGKPFSFGHPSVDAVAHRFLQQREGAPESGGSSNCSSKDGCVKAEKLKKRLVNLTKQLEAEKKKGEMLERALEEKRLACGFGPGADDVGKLEKTKRRLEKFREEVKVRAREMEAAASLVMLAAKKEKC 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g3382 178 Coils Coil 91 128 - -
Bisa07g3382 178 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bisa07g3382 178 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bisa07g3382 178 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bisa07g3382 178 SUPERFAMILY SRF-like 1 72 IPR036879 GO:0003677|GO:0046983
Bisa07g3382 178 Coils Coil 141 161 - -
Bisa07g3382 178 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Bisa07g3382 178 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bisa07g3382 178 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Bisa07g3382 178 PANTHER MADS BOX PROTEIN 3 156 - -
Bisa07g3382 178 Gene3D - 14 79 IPR036879 GO:0003677|GO:0046983
Bisa07g3382 178 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bisa07g3382 178 CDD MADS_MEF2_like 2 71 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g3382 Bisa-ChrBisa07 69015575 69016111 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g3382 1 174 Type I MADS-box Gene Family AT2G34440 44.068 3.47e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bisa07g3382 SRF-TF 4.6e-24 No_clan