Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g3290 ATGGGGAGAGGTAGGGTTCAGCTGAAGAGGATCGAGAACAAAGCGAGCAGACAAGTGACGTTTTCGAAGCGAAGAACTGGACTTCTCAAGAAAGCCCATGAAATCTCTGTGCTCTGTGACGCTCAGGTTGCTTTGATTGTCTTCAATTCCAAAGGCAAACTCACTCAGTATTCATCTGATTCTTCCAGTGTGGAAAGCATCCTAGAACGATATGAAAGACATACACACTTAGAACAACTTACCGAATCTAACAATGATACACAGGGAGATTTGTCCTTGGAATTATTCAAGCTCACTTCTAAAGCTGAAGTTTTGGAGAGAAACATAAGGAATTACGTAGGAGATGATCTCGACCCCTTGAGTATGAGAGAGCTTCAGAGTTTGGAGCAGCAACTTGACACTGCTCTAAGGCGCATTCGTGTTAGAAAGAACCAAATGATGAATGAATCCATCTCAGAGTTGCAGAGAAAGGGAAGGTCATTGCAGGATCATAACAGCATGCTGGCAAAGAAGATAAAGGAGAAGGCGAAGTCACAGGAAATTGCTGCGCAAGAATCCCTAGAGTTACGCCAATGTCCTTTAAACTTCAACTTATCTCTACCACAAATACCACCTCCTTCACAACTACTACCTCCTTCCCTAGCTCTCGGTGCAAGTTTTGAAGGACGAGGATCTCTGGTGGAGGAGGTAGAGGTTGAAGCCCAAGCTGGTCCTAGTAACACCACCGTCATGCCCCCATGGATGCTGGTTCATATGACTAGGTAG 765 0.4497 MGRGRVQLKRIENKASRQVTFSKRRTGLLKKAHEISVLCDAQVALIVFNSKGKLTQYSSDSSSVESILERYERHTHLEQLTESNNDTQGDLSLELFKLTSKAEVLERNIRNYVGDDLDPLSMRELQSLEQQLDTALRRIRVRKNQMMNESISELQRKGRSLQDHNSMLAKKIKEKAKSQEIAAQESLELRQCPLNFNLSLPQIPPPSQLLPPSLALGASFEGRGSLVEEVEVEAQAGPSNTTVMPPWMLVHMTR 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g3290 254 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Bisa07g3290 254 Coils Coil 125 145 - -
Bisa07g3290 254 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bisa07g3290 254 FunFam MADS-box transcription factor MADS-MC 13 87 - -
Bisa07g3290 254 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
Bisa07g3290 254 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bisa07g3290 254 Gene3D - 13 87 IPR036879 GO:0003677|GO:0046983
Bisa07g3290 254 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 166 - -
Bisa07g3290 254 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bisa07g3290 254 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bisa07g3290 254 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bisa07g3290 254 Pfam K-box region 83 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa07g3290 254 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bisa07g3290 254 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa07g3290 254 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g3290 Bisa-ChrBisa07 67905887 67915898 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g3290 1 229 MADS-box Gene Family AT1G26310 52.119 5.04e-72 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bisa07g3290 K-box 7.4e-26 No_clan