Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g3289 ATGACACAGATTTTGCTTATAATAAACAACCCTAAATACAACTGTCACGACGCGCTACACTGCACTTGCATTGCCTTCGTTAAATCACTGATCTGCTCAGCTCGATCAGGCTCAAGCCTCAAAGCAGAGGACGTGGGGTCACGCGCCGAGGGTGGTGCTGGGGAAGTAGGGTTTTGCCAGAAAAACCTTAACCAAGCAAAGCATGGGAAGGAGAAGGATATGGGAAGGGGAAGAGTGGAGCTGAAGAGGATAGAGAACAAGATAAACAGGCAGGTCACATTTGCCAAGAGGAGAAATGGGCTTCTCAAGAAGGCCTATGAGCTCTCTGTTCTCTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAGCCGTGGGAAGCTCTATGAGTTTTGTAGCAGCTCTAACATGCTGAAGACACTCGAAAGATACCAAAAGTGCAGCTATGGTTCAGTAGATGTCAGCAAGCCTGCCAAAGAGCTCGAGACTAGCTACCGTGAGTACTTGAAGCTGAAAGCCAGATTTGAATCTCTTCAAAGGACTCAAAGAAACCTTCTAGGGGAGGACCTGGGCCCACTGAATACCAAGGAATTAGAGCAGCTTGAGCGACAACTGGACTCGTCTCTCAAGCAAGTGAGGTCCACTAAGACCCAATACATGCTGGACCAGCTATCTGATCTTCAAAATAAGGAGCATATGTTGGTAGAAGCAAACAGAGCTTTGACTATGAAGCTGGAAGACATAAACGCAAGAAACCAGTTTCGGCAAACATGGGAAGGTGGCGATCAAAGCATGGCATATGGAAATCCGCAGAATGCTCACTCTCATCAGGCCTTTTTCCAGCCTCTGGAATGCAACCCCACATTGCAGATTGGGTACAACCCTGTAGCTTCAGATCAGATGACTGCAACAAGCCAAGGGCAGCAAGTGAATGGTTTCATTCCAGGATGGATGCTCTGA 957 0.4786 MTQILLIINNPKYNCHDALHCTCIAFVKSLICSARSGSSLKAEDVGSRAEGGAGEVGFCQKNLNQAKHGKEKDMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSSNMLKTLERYQKCSYGSVDVSKPAKELETSYREYLKLKARFESLQRTQRNLLGEDLGPLNTKELEQLERQLDSSLKQVRSTKTQYMLDQLSDLQNKEHMLVEANRALTMKLEDINARNQFRQTWEGGDQSMAYGNPQNAHSHQAFFQPLECNPTLQIGYNPVASDQMTATSQGQQVNGFIPGWML 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g3289 318 ProSiteProfiles MADS-box domain profile. 74 134 IPR002100 GO:0003677|GO:0046983
Bisa07g3289 318 CDD MADS_MEF2_like 75 152 IPR033896 GO:0000977|GO:0045944
Bisa07g3289 318 ProSitePatterns MADS-box domain signature. 76 130 IPR002100 GO:0003677|GO:0046983
Bisa07g3289 318 PANTHER SERUM RESPONSE FACTOR HOMOLOG 76 260 - -
Bisa07g3289 318 ProSiteProfiles K-box domain profile. 160 250 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa07g3289 318 Pfam K-box region 158 244 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa07g3289 318 SMART madsneu2 74 133 IPR002100 GO:0003677|GO:0046983
Bisa07g3289 318 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 83 130 IPR002100 GO:0003677|GO:0046983
Bisa07g3289 318 SUPERFAMILY SRF-like 75 151 IPR036879 GO:0003677|GO:0046983
Bisa07g3289 318 PRINTS MADS domain signature 76 96 IPR002100 GO:0003677|GO:0046983
Bisa07g3289 318 PRINTS MADS domain signature 96 111 IPR002100 GO:0003677|GO:0046983
Bisa07g3289 318 PRINTS MADS domain signature 111 132 IPR002100 GO:0003677|GO:0046983
Bisa07g3289 318 Gene3D - 86 156 IPR036879 GO:0003677|GO:0046983
Bisa07g3289 318 FunFam MADS-box transcription factor 1 86 160 - -
Bisa07g3289 318 Coils Coil 197 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g3289 Bisa-ChrBisa07 67886427 67892210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g3289 74 318 MADS-box Gene Family AT5G15800 74.242 4.16e-121 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bisa07g3289 K-box 1.1e-27 No_clan