LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa07g3287	ATGGTAGCTAATAAGATGAAGGGTTCAGAGAAATTAGGGTGGAAGAAAGGGCCTTGGACTCTTGAAGAGGATAAGTTGCTCAGTGAATATGTGACCTTGCATGGCGAAGGAAGATGGAGTTCTGTGGCCAAGTTTACAGGTTTAAATAGGAGTGGGAAAAGTTGCAGGTTGAGATGGGTGAACTACTTGAAGCCAGGGTTGAAGAAAGGCCAATTAACACCTCACGAAGAAACCATCATTTTTGAACTCCATGCTTTGCTCGGCAACAAGTGGTCTACAATAGCGAAATATTTGCCGGGAAGAACAGACAATGAGATTAAGAACTACTGGAGAACCCACTTCAAGAAGAAAGACAAATCCTCTCGTAATAACAAGAAGCAAGAAAAGCGAAGAGGCAAGATTCTAAAACACATGAAACAACAGGAGCAACAACAACAACCTCAAGATCATCATCAACATGACCATGCGACCAAAAGCAGCAGCTCTTCTCAAGCTCATCACTCCAACAGTACTGAAACAAACCTCTGCGAGACTACTGTTCTACAGGACAACAACTACAATATGGAACTGGAGCAATATATGTATGAAGATCAGTACTTTCCAATTCCACCCTTATGGTGGCCAGAAGAAGAAGATGAAGGATTGTGGGTTACTTTATGGAACCTTGAGGAGACAACACAGGCGGGTGATGGAGATCAAGTAAAGCAGTGCTGCACCAAATGTGGCATGCAAAATCAAGATACAACTTGTTGTTTCCATGATTTTTCCAATAACTACATGTTTGGCTGA	789	0.4221	MVANKMKGSEKLGWKKGPWTLEEDKLLSEYVTLHGEGRWSSVAKFTGLNRSGKSCRLRWVNYLKPGLKKGQLTPHEETIIFELHALLGNKWSTIAKYLPGRTDNEIKNYWRTHFKKKDKSSRNNKKQEKRRGKILKHMKQQEQQQQPQDHHQHDHATKSSSSSQAHHSNSTETNLCETTVLQDNNYNMELEQYMYEDQYFPIPPLWWPEEEDEGLWVTLWNLEETTQAGDGDQVKQCCTKCGMQNQDTTCCFHDFSNNYMFG	262

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa07g3287	262	Gene3D	-	15	68	-	-
	Bisa07g3287	262	Gene3D	-	72	117	-	-
	Bisa07g3287	262	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	15	67	IPR017930	-
	Bisa07g3287	262	MobiDBLite	consensus disorder prediction	135	157	-	-
	Bisa07g3287	262	ProSiteProfiles	Myb-like domain profile.	15	63	IPR001005	-
	Bisa07g3287	262	Pfam	Myb-like DNA-binding domain	70	113	IPR001005	-
	Bisa07g3287	262	Pfam	Myb-like DNA-binding domain	16	63	IPR001005	-
	Bisa07g3287	262	CDD	SANT	73	114	IPR001005	-
	Bisa07g3287	262	FunFam	Myb transcription factor	16	68	-	-
	Bisa07g3287	262	MobiDBLite	consensus disorder prediction	113	134	-	-
	Bisa07g3287	262	ProSiteProfiles	Myb-like domain profile.	64	114	IPR001005	-
	Bisa07g3287	262	PANTHER	TRANSCRIPTION FACTOR MYB33-RELATED	13	192	-	-
	Bisa07g3287	262	CDD	SANT	18	63	IPR001005	-
	Bisa07g3287	262	MobiDBLite	consensus disorder prediction	109	176	-	-
	Bisa07g3287	262	SMART	sant	68	116	IPR001005	-
	Bisa07g3287	262	SMART	sant	15	65	IPR001005	-
	Bisa07g3287	262	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	68	118	IPR017930	-
	Bisa07g3287	262	SUPERFAMILY	Homeodomain-like	13	110	IPR009057	-
	Bisa07g3287	262	MobiDBLite	consensus disorder prediction	158	176	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa07g3287	Bisa-ChrBisa07	67870507	67871676	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa07g3287	13	224	MYB Transcription Factor Family	AT3G30210	53.670	1.78e-67	208

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Bisa07g3287		Myb_DNA-binding	5e-17	CL0123