Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g3173 ATGCTAAGCATCGATACCAACAAGACGCTCTTTGTTTTCTTCAATCTCCGTGGCCGGGGTAATATGCGCAACTTCCGGAGCTCGTGATGTAGCATGCTTGTAAAAACAACTCAAAGCAGAAGAGTTCGGAGTACTAAATGGTTCTTATTGATTGAGAAGATATACATCAGATCTGGATTAGCGATGGCTCCTGGAGGCAGTGCTTGCAAAGAAGTTCTTGAGTCTCGCCAGACATTTTCAGATTATGATACAGCCAAGGCCAAGTCTGAGGCTAATAGTAATAGTACTCATGCAAAAATTAGCATTGGGTTGGGTGGAAAACATGGAATTAATTCAAAGAGTGGTGTGCATGCCTTACTTGAGTGTTCTGTCTGCAAGAACTTGATGTATCCCCCAATCCACCAGTGCCCTAATGGCCACACACTATGTTCAAACTGTAAGATTGGAATGCATAACCGTTGCCCAACTTGTCACTACGATCTTGGAAATATAAGGTGTTTGGCTCTGGAGAAAGTAGCTGAATCATTGGAGATTCCTTGCAAATATCAGAATTTAGGTTGTCCTGATATATTCCCATACTACTCGAAACTTAAGCATGAGCAAAGCTGTCGATTTCGTCCATACAATTGTCCCTACGCCGGATCTGAGTGCTCTGTGGTGGGTGACATTCCAACTCTTGTTGCCCATCTCAAGGATGATCACAGGGTTGACATGCATGTTGGATCCACTTTCAACCATCGATATGTCAAATCAAATCCACATGAAGTTGAAAACGCCACTTGGATGCTAACTGTTTTTAATTGTTTCGGAAGGCATTTCTGCTTGCACTTTGAGGCCTTCCAGCTTGGCATGGCTCCAGTATATATGGCCTTTTTAAGATTCATGGGTGATGACAGTGAGGCAAAGAAATTCAACTACAGTCTGGAAGTTGGTGCAAATGGCCGCAAACTCATATGGCAAGGGATTCCAAGGAGCATTCGTGACAGTCACAGAAAGGTTCGCGACAGCCAAGATGGACTGATCATTCAAAGGAACCTAGCTCTTTATTTTTCCGGTGGGGATAGGCAGGAGTTGAAGTTGAGAATCACTGGTCGTATATGGAGAGAAGATTAA 1113 0.4349 MLSIDTNKTLFVFFNLRGRGNMRNFRSSXCSMLVKTTQSRRVRSTKWFLLIEKIYIRSGLAMAPGGSACKEVLESRQTFSDYDTAKAKSEANSNSTHAKISIGLGGKHGINSKSGVHALLECSVCKNLMYPPIHQCPNGHTLCSNCKIGMHNRCPTCHYDLGNIRCLALEKVAESLEIPCKYQNLGCPDIFPYYSKLKHEQSCRFRPYNCPYAGSECSVVGDIPTLVAHLKDDHRVDMHVGSTFNHRYVKSNPHEVENATWMLTVFNCFGRHFCLHFEAFQLGMAPVYMAFLRFMGDDSEAKKFNYSLEVGANGRKLIWQGIPRSIRDSHRKVRDSQDGLIIQRNLALYFSGGDRQELKLRITGRIWRED 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g3173 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 174 IPR013083 -
Bisa07g3173 370 FunFam E3 ubiquitin-protein ligase SINAT5-like 74 173 - -
Bisa07g3173 370 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 233 363 IPR008974 GO:0005515
Bisa07g3173 370 FunFam E3 ubiquitin-protein ligase SINAT5-like 231 363 - -
Bisa07g3173 370 CDD RING-HC_SIAHs 120 158 - -
Bisa07g3173 370 ProSiteProfiles Zinc finger RING-type profile. 122 158 IPR001841 -
Bisa07g3173 370 SUPERFAMILY TRAF domain-like 175 367 - -
Bisa07g3173 370 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 86 368 - -
Bisa07g3173 370 CDD Sina 236 364 - -
Bisa07g3173 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 175 230 IPR013083 -
Bisa07g3173 370 SUPERFAMILY RING/U-box 116 164 - -
Bisa07g3173 370 ProSiteProfiles Zinc finger SIAH-type profile. 175 235 IPR013010 GO:0008270
Bisa07g3173 370 FunFam E3 ubiquitin-protein ligase SINAT3 174 230 - -
Bisa07g3173 370 Pfam Seven in absentia protein family 164 363 IPR018121 GO:0005737|GO:0006511|GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g3173 Bisa-ChrBisa07 66426589 66430092 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g3173 62 370 C3H Transcription Factor Family AT2G41980 78.964 0.0 518