Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g3165 ATGGAGCTGGCGTTGAGCTTGGGAGACACACCGAAGGCGTTCTCCATTCTCGAGAAGCCCAACAAGGACGCCGGTTTCTGCATAGCACTCGGAGAAGGGTTCGCCGGAAAAGCCTCCGACGAGAAAAGAGGGAATCCCAGTGAAGCCTCCGATGACGACGACCGAAGAGGCTCGTCAGATCCGCCTCTTCAGCTCGATCTCCTTCCTTTCACACCCCTCCCTCGACCCCACCCACCTTCTCACCTTCGGATCCCTTGGCTCTCTGATTCATTGGGGATGAAAGGTGGGAGGGCGTTGGATGTGAACCGTTCACCGGCGGGAGGAGGGGACGAGGGGGACGATGGGACCCCACTGTCATCGTCGTCCCCTAACAGCGTCTCATCGTTTCAGATGGAGTTCTGCATTAGGAACGGCGTCGTAGGCGGAAGAAGCAAGAGAGACCACGAGGGAGACGGCGAGGGCGACAGAACCAGTTCCAGAGCCAGCGATGATGACGAAAATGGTTCCACTCGCAAGAAACTCAGACTCTCCAAGGAACAATCTGCTTTTCTTGAAGAGAGCTTCAAAGAACACACTACCCTCAACCCTAAGCAGAAACTTGCTCTGGCAAAACAGTTAAACCTTCGTCCTCGTCAAGTAGAAGTGTGGTTTCAGAATAGAAGGGCAAGGACAAAGTTGAAGCAAACGGAAGTGGATTGTGAATATCTAAAGAGATGCTGCGAGACACTGACGGAAGAGAATCGGAGGTTGCAGAAGGAACTGCAAGAACTGAGGGCTTTAAAGACGTCTCAGCCATTCTACATGCAGCTCCCCGCCACCACTCTCACCATGTGCCCCTCCTGCGAACGCGTCGCCACCAACCCATCCTCCACCACCGCCGCCGCCACAAATTCTCCGCTTCCTCCGCCGCTCATTTCCCTCAACAACCCTAGAACTCTGCCCTTTGATAGTAGCGGTCAACCTCATCATGCTCCTTCACCATGA 984 0.5457 MELALSLGDTPKAFSILEKPNKDAGFCIALGEGFAGKASDEKRGNPSEASDDDDRRGSSDPPLQLDLLPFTPLPRPHPPSHLRIPWLSDSLGMKGGRALDVNRSPAGGGDEGDDGTPLSSSSPNSVSSFQMEFCIRNGVVGGRSKRDHEGDGEGDRTSSRASDDDENGSTRKKLRLSKEQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNPSSTTAAATNSPLPPPLISLNNPRTLPFDSSGQPHHAPSP 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g3165 327 FunFam Homeobox-leucine zipper protein 18 156 232 - -
Bisa07g3165 327 ProSitePatterns 'Homeobox' domain signature. 202 225 IPR017970 GO:0000981|GO:0006355
Bisa07g3165 327 SUPERFAMILY Homeodomain-like 160 228 IPR009057 -
Bisa07g3165 327 SMART halz 227 270 IPR003106 GO:0006355|GO:0043565
Bisa07g3165 327 Pfam Homeodomain 171 225 IPR001356 GO:0003677
Bisa07g3165 327 MobiDBLite consensus disorder prediction 141 177 - -
Bisa07g3165 327 MobiDBLite consensus disorder prediction 287 302 - -
Bisa07g3165 327 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 46 295 - -
Bisa07g3165 327 MobiDBLite consensus disorder prediction 35 126 - -
Bisa07g3165 327 Gene3D - 175 225 - -
Bisa07g3165 327 MobiDBLite consensus disorder prediction 287 327 - -
Bisa07g3165 327 MobiDBLite consensus disorder prediction 139 177 - -
Bisa07g3165 327 MobiDBLite consensus disorder prediction 310 327 - -
Bisa07g3165 327 ProSiteProfiles 'Homeobox' domain profile. 167 227 IPR001356 GO:0003677
Bisa07g3165 327 MobiDBLite consensus disorder prediction 36 60 - -
Bisa07g3165 327 MobiDBLite consensus disorder prediction 67 81 - -
Bisa07g3165 327 Coils Coil 233 263 - -
Bisa07g3165 327 CDD bZIP 220 259 - -
Bisa07g3165 327 Pfam Homeobox associated leucine zipper 227 261 IPR003106 GO:0006355|GO:0043565
Bisa07g3165 327 CDD homeodomain 171 228 IPR001356 GO:0003677
Bisa07g3165 327 SMART HOX_1 169 231 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g3165 Bisa-ChrBisa07 66339691 66341029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g3165 142 284 Homeobox Transcription Factor Family AT4G37790 72.436 1.16e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bisa07g3165 Homeodomain 2.5e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa03g2265 03 32974884 32976138 Bisa07g3165 07 66339691 66341029 CCT
Bisa07g3165 07 66339691 66341029 Bisa07g3165 07 66339691 66341029 ECH