Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g3148 ATGGATACCCGCAAGAGAGGGAGGTTTGAAGGTGGATTCAGTGTTAATGGCGGCTCCAAAAAGTTCAAGCAAGAAATGGACTCCTTATCAACTGCTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTGCTGGCTGCCCGTTCGGTGAGAGCTGCCACTTCTTGCACTATGTTCCTGGTGGTTACAATGCTGTTGCTCAGATGATGAATTTAGCGCCTGCTGGGCCTCCAGCATCTAGAAATATTGCACCAGCACCACAAGTCCCTAATGGGTCTACACCACCCACTGTTAAAACCCGCATATGCAACAAATATAATACTGCTGAAGGCTGCAAATTTGGTGACAAGTGCCATTTTGCCCATGGTGAATGGGAACTTGGAAAGTCCATTTCTTCGACAGTGGATGATCATCGAACCATGGGACCACCTATGCCCAATCGCTTGGCTGGTCGAATGGAGCCACCGCCGCGTCCTGTTTCTACTTTTGGTGCCAATGCCACTGCCAAGATCAGTGTTGAAGCTTCCTTGGCTGGAGCAATAATTGGAAAAGGTGGTGTGAACTCAAAGCAGATCTGTCGCCAAACAGGAGCTAAACTGTCAATTCGGGATCATGAGTCAGATCCAAATCTTAGGAACATTGAACTTGAGGGTAGTTTTGAGCAAATTCAGGAAGCAAGCAACATGGTAAAACAGTTACTGGTGACTTTATCAATGTCTGCGCCACCTAAAACTCATGGTCCTCCTGGAGTGCCAGGCTCTCATGGAAGTAACTTTAAGACAAAGCTGTGTGAGAATTTTGCTAAAGGATCTTGCACCTTCGGAGAAAGATGTCACTTTGCACATGGTGCTGCAGAATTGCGTAAAGCAGGAGTATGA 885 0.4678 MDTRKRGRFEGGFSVNGGSKKFKQEMDSLSTAVGSKSKPCTKFFSTAGCPFGESCHFLHYVPGGYNAVAQMMNLAPAGPPASRNIAPAPQVPNGSTPPTVKTRICNKYNTAEGCKFGDKCHFAHGEWELGKSISSTVDDHRTMGPPMPNRLAGRMEPPPRPVSTFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGSFEQIQEASNMVKQLLVTLSMSAPPKTHGPPGVPGSHGSNFKTKLCENFAKGSCTFGERCHFAHGAAELRKAGV 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g3148 294 Pfam KH domain 171 233 IPR004088 GO:0003723
Bisa07g3148 294 SUPERFAMILY CCCH zinc finger 35 61 IPR036855 GO:0046872
Bisa07g3148 294 SMART kh_6 167 237 IPR004087 GO:0003676
Bisa07g3148 294 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Bisa07g3148 294 SMART c3hfinal6 99 126 IPR000571 GO:0046872
Bisa07g3148 294 SMART c3hfinal6 260 286 IPR000571 GO:0046872
Bisa07g3148 294 ProSiteProfiles Type-1 KH domain profile. 168 232 - -
Bisa07g3148 294 PANTHER CCCH ZINC FINGER/TIS11-RELATED 27 145 IPR045877 GO:0003729
Bisa07g3148 294 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Bisa07g3148 294 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 157 238 IPR036612 GO:0003723
Bisa07g3148 294 ProSiteProfiles Zinc finger C3H1-type profile. 260 287 IPR000571 GO:0046872
Bisa07g3148 294 SUPERFAMILY CCCH zinc finger 97 129 IPR036855 GO:0046872
Bisa07g3148 294 Gene3D - 93 131 - -
Bisa07g3148 294 Gene3D - 260 292 - -
Bisa07g3148 294 Gene3D K Homology domain, type 1 165 259 IPR036612 GO:0003723
Bisa07g3148 294 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 261 285 IPR000571 GO:0046872
Bisa07g3148 294 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 101 126 IPR000571 GO:0046872
Bisa07g3148 294 FunFam Zinc finger CCCH domain-containing protein 94 131 - -
Bisa07g3148 294 SUPERFAMILY CCCH zinc finger 259 290 IPR036855 GO:0046872
Bisa07g3148 294 ProSiteProfiles Zinc finger C3H1-type profile. 99 127 IPR000571 GO:0046872
Bisa07g3148 294 CDD KH-I_AtC3H36_like 171 236 - -
Bisa07g3148 294 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Bisa07g3148 294 FunFam Zinc finger CCCH domain-containing protein 255 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g3148 Bisa-ChrBisa07 66130292 66133955 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bisa07g3148 KH_1 1.9e-12 CL0007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa03g2285 03 33313865 33319324 Bisa07g3148 07 66130292 66133955 CCT