Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g3147 ATGGCGTCCAAAGGTCCGAGGTCTAAGATTGATCATGAGACAAGAGCAAAGCGACAAAAGGCACTTGAAGCTCCAAGGGAGCCTCGACGACCCAAAACTCATTGGGATCATGTCATAGAAGAGATGGTCTGGTTATCAAAGGACTTTGAGTCAGAAAGGAAGTGGAAATTAGCTCAGGCAAAGAAAGTTGCTTTAAGAGCTAGCAAGGGCATGTTAGATCCAGCCACAAGAGGTGAAAAGAAGATGAAGGAGGAGGAGCAGCGATTAAGAAAAGTTGCACTAAATATTTCCAAGGATGTCAAGAAATTCTGGACGAAAATAGAAAAGCTGGTTCTTTACAAGCATCAGATGGAGCTTGATGTGAAAAAGAAAAAGGCACTTGACAAACAGCTTGAGTTTCTTTTGGGGCAAACTGAGAGGTACTCAACCATGCTGGCAGAAAATCTTGTTGATGCTATTAAACCCGTAGAGAAACAGTTGTCAGAGCGGCATAAGAGTACTCAATACAAGGGAGTAGATGAAGACATTATCAACAAATTTAACAAAGCTGGTGACGATTTTCAGTCAGATGCTGTTGACAATGATGAAGAATACAATGTACAATCTGATGATGAATCGGAGGATGATGAACAAACCCTTGAGGAAGATGAGGCTCTTGTAACTGAAGAAGAAAGGAAAGAGGAGTTGGCAGCTTTGCATGATGAAGTTGACCTTCCACTTGAGGAGTTGCTAAAACGTTATTCTGGAGAGAAAGAAGGATCTGATAGTCGAGGAAGTAGCCCAGAACAAAGAGAAGATGATAATAAAATAGTCAGAGCTGATGATGGCAATGGTAAAGGACAAGCACCGGAAAACGGAGACATTCATTTATCTGTTAGCAAGATTGACTCAAGCAACTCAAGCATGGTCCCTGGTCGTCGTTGTGATGAAAGCAATGGTGGCCAAACTACATCAGCAAAGAATCTATCTACAGATAAGACTTGTCAATCTGAAAATCTAAAACAAATTTCTAGTGAGCGGGCCACAGAAGATTTTGCGTATGACTTTAGTGATGAAGAGGAAGATGGTGACTTCTTGCTTGCCACAGAAGATAAGGATGATGAAAGAACTTTATCTGAGGAGGAAAAACTGGAAAAAGAGGATGCAATTGATCCCAAGGATGAGATTGCATTATTACAAAAGGAGAGTGACATGCCTGTTGAGGAACTCCTTGCAATGTATAGAAAGTACTCCAGTGACGATGAACATGGGGAAGATGAATCTGATGATACTTCTGCATTATCGGAGGACCTGTTGGATTCTTCACTTCATGAAGATGGTGGGAAGAAGGATCCTGCTGTTTCTGTGGATGAAGATGTCAAACCTGTTGAGCAACTGGCTGCTGTACAGTGCCAGGCAGAGCAACAATGGGAAGCGCCAAACGAAAGTTCAGATGGAAAAGAGAGTGAAAACCTAATTGCAGATGCAGCAGCCGCTGCAAGATCAGCACAACCAACTGGAAACACCTTCTCCACCACTAAAGTGCGCACAAAATTCCCTTTTCTACTCAAGTACCCTCTCCGTGAGTATCAACATATTGGATTGGATTGGCTTGTTACAATGTATGAAAAAAGACTGAATGGGATTCTGGCAGATGAAATGGGGCTTGGTAAAACAATTATGACAATAGCTTTGCTTGCACATCTTGCTTGTGAAAGAGGAATTTGGGGCCCACATCTCATTGTGGTACCAACTAGTGTCATGCTTAATTGGGAGACTGAATTTCTCAAATGGTGTCCTGCTTTTAAAATTCTAACTTATTTTGGTAGTGCAAAGGAGCGGAAACTTAAGAGACAAGGATGGTTGAAACCAAACTCATTTCATATATGCATAACAACTTATAGACTAATTATTCAAGATTCTAAAGTTTTTAAGCGCAAGAAGTGGAAATACTTGATCTTAGATGAAGCTCATCTCATTAAAAATTGGAAGTCTCAAAGATGGCAGACACTCTTGAATTTCAATTCAAAACGACGTATTCTCTTGACTGGTACACCACTGCAGAATGATCTTATGGAACTCTGGTCTCTCATGCATTTCTTGATGCCCCATGTTTTCCAGTCTCATCAAGAGTTTAAGGATTGGTTTAGTAATCCTATTTCTGGGATGGTAGAGGGGGAGGAAAAAGTTAATAAGGAGGTTGTTGATCGCTTGCATAATGTCCTTCGTCCTTTCATACTCCGTCGATTAAAGCAAGATGTGGAGAAGCAACTTCCAATGAAACATGAGCATGTCATATATTGTAGACTGTCAAAAAGGCAGCGGAATTTGTATGAAGACTTCATTGCTAGCACAGAGACTCAAGTCACTCTTGCAAGTGCCAATTTTTTTGGGATGATTAGTATCATAATGCAACTTCGTAAGGTTTGCAATCATCCTGACCTATTTGAGGGTCGTCCTATTGTGAGTTCTTTTGATATGCAGGGTATTGATGTTCAGATAAGTTCTTCTGTGTGTTCAATGTTCTCACCTAGCCCTTTTTCAGTGGTAGACCTAAGAGGTTTAGGATTTTTATTTACTCATCTTGACTATAGTATGACTTCGTGGGAGAGTGATGAAATAAAAGCTATCGAGACCCCTGCAAGTTCAATTATGGAGCGTGCTGATGTGAATGACCTACAAGTAATTAGGCCTGAATTGAAGTATAGGAAGAAGCTTCATGGAACTAATATTTTTGAGGAAATTCAGAAGGCAATTTGGGAAGAGAGGCTGAGACAGGCAAAGGAACGGGCAGCAGCTAGTGCATGGTGGAATTCCTTGAGGTGTAAAAGAAGGCCCATCTACTCAACAACCCTACGGGATCTTCTTACCATTAAGCATCCTGTATATGACATTCATGAAGTGAAGTCTAATCCTATTTCATACATGTACTCCTCTAAGCTAGCTGATGTTGTCCTCTCTCCAGTTGAACGTTTCCAAAGGATGATCGATGTAGTTGAAGGTTTCATGTTTGCGATTCCAGCGGCACGAGCTCCTCCTCCTGTTTGCTGGTGCAGTAGAAGTGAAACTCCTGTGTTTCTGCATCCATCTTACAAGCAGAAATGCTCTGAAGTTTTGTCACCCCTTTTGTCACCTATCAGGCCTGCAATTGTCCGACGGCAGGTGTATTTCCCAGATAGACGTCTTATACAGTTTGACTGTGGGAAATTGCAGGAGCTTGCTATATTACTGAGGAGATTAAAATCAGAAGGTCACCGAGCACTGATATTCACTCAGATGACAAAGATGCTTGACACATTGGAGGCTTTCATTAATTTGTATGGTTACACTTACATGCGATTGGATGGATCAACACAACCAGAGGAGAGGCAGACCTTAATGCAGCGTTTCAACACAAACCCCAAAATTTTTCTTTTCATCTTGTCAACCCGGAGTGGGGGTGTTGGTATCAATCTAGTTGGAGCCGACACAGTTATTTTCTATGATAGTGACTGGAATCCAGCTATGGATCAACAGGCCCAAGATAGGTGCCATAGGATTGGTCAGACACGAGAAGTTCACATCTATAGATTGATAAGTGAAAGCACCATTGAAGAGAACATTTTGAAGAAAGCAAAACAGAAGCGTGCACTTGATGATCTGGTTATACAAAGTGGTGGATATAATACAGATTTTTTCAAGAAGCTTGATCCTATGGAATTATTTTCTGGTCATAGAGCGCTTGCAGTTAAAAATATGCAGAAGGAGAAACATCAGATCAGTGGAGCTGAAGTTTCTGTAACTAATGCAGATGTGGAGGCAGCATTAAAATCTGCTGAAGATGAAGCAGATTATATGGCATTGAAGAAAGTTGAACTGGAAGAAGCTGTGGAAAACCAAGAGTTCACTGAAGAAGCTATTGGGAGACTTGAGGAGGATGAGTATATAAATGATGATGATATGAAAGTTGATGAACCCGCAGAATTAGGTGAATCAGTTTCTAAGTTAAGTAAAGAGAATGCTGTAAGCGATCCTAAAGAAGAAAGACCTCTCTCTATGGCTGTCAAAGAAGATGATGTTGACATGCTGGCTGATGTCAAACAAATGGCTGCAGCTGCAGTTGCAGCTGGACAAGCTATCTCAGCCTTTGAGAATCAGCTACGTCCAATTGATCAATATGCCATTCGTTTTCTGGAGATGTGGGATCCCATTATAGATAAAGCAGCCTTGGAATCTGAAGTGAAGATTGAGGATACAGAATGGGAGTTGGATCGTATTGAGAGGTACAAGGAGGAGATGGAAGCTGAAATTGATGAAGATGAGGAACCTTTTGTATATGAAAGATGGGATGCTGATTTTGCGACTGAGGCATATCGACAGCAAGTAGAGGCCTTGGCTCAGCATCAGTTAATGGAGGAACTCGAAAATGAGGCTAGGCAGAAAGAAGAGGCTGATGAAGAAAATTGTGATTCTGGAAAGATTCAAACATCAAGGGATTCTAAGCCTAAACCTAAAAAGAAACCCAAGAAAACCAAATTTAAATCTCTGAAGAAAGGATCTTTAGCCTCTGAATCGAAAGCTATGAAAGAAGAGCTACAAGCAGAGCCAATGTCTATAGATGATGAGGCTGTCACTAGTCTGGACCTGGTGTCTTCAAATTCAACTATGCAGAAAAAGCGTAAAAAGTGTAAATTTATAGCAGATGGTGAAAAAGAGAAGATATCAAAGAAGTCCAAAAAGACCAAGAGGGCCCCTGATATTTGTGCTTCAGATTTAGATTGTGCCTTGTTAGGTTCGCCAGACGAGCATGCAGAACCAAAGCAATGTGAAGGTATAGTTGACTTTGAACAGAAACCTGCCAGTAGGAGTAAGATGGGAGGAAAAATATCTATAACTCCAATGCCTGTAAAACGGGTGCTGATGATAAAACCAGAAAAAGTGAAGAAGGGAAATGTTTGGTCCAGAGATTGTGTTCCATCAGCTGATTTTTGGTTTCCCCAGGAAGATGCAATTTTATGTGCAGTTGTTCATGAATATGGTTCTAACTGGAGTTTGGTTAGCGAAACACTTTATGGCATGACTGCTGGTGGATCATACAGGGGGAGATATCGTCATCCTGTCCATTGCTGTGAGAGGTTCAGAGAACTAGTCCAAAAATATGTTTTGTCAACATTAGACAATGCTAATCATGAGAGGATCAATAATACTAGCTCTGGAAAGTCTCTTCTTAAAGTTACAGAGGATAACATTCGGATGTTGTTAGATGTTGCTTCAGAGCAGGAAAATAGGGAGTTCCTACTGCAGAAGCACTTTTTTGCTCTGCTTTCATCTGTCTGGAAGGTGGCATCACATGTTGACCGTAGGCAAAATCTATCACCAACGCAAAATGGTCGCTGTTTTGATCGAAGTTTCTTTCCTTCCATTGGCCAGCATTCTCAGAATTTTTTGAAGAAACCTTCTGAAAGGATGACATTCCCTAATTTGGCCCAGAGCAGGAACTTATTAGCTGCTGCACTTGATGATGCCGGCAGTAGGCAGCAGGATGACAAAATCTGTGTCGCCAATCATGGTGATGATGTGCCAGTGACTGCAGACCAGTTGGATGTAACTCTGGAGATCCAGAATGAAAAGAGTGACACATCTTTATTTCCATCTGTTATAAATTTATCAATACAAGGGACAGAACCACCACCATCATTGAATAAGCAAACTGGGGAAGATGATCATTTTAGGGCTTGTGGGTCTGTTGCTGAGGATCGGTTTAGGGAGGCAGCAAAGGCTTGCGAGGAAGACAGTTGTGGATGGGCTTCATCTGTATTCAGTACAAATGACGCAAAGGCCAAATCAGGATCTAAGATACAAGCTTCAGGAAAGCACAAATCTTCCACCTCGGACTCTATTAAGCCCTCTAAATCAAAGTCCAAACGACCTTCAATGGATCCTAGTGAGATGCGTCCCCAACAGGCTGAGCCATTTTTCCAGTCAGTGCCACCATTTCAAGCCAGGGATGTGAGATTTGATCTCACCACATCAACTATGGATGATATGGATCGCAATCTTTCCCTTGGCTTAGATGAGGAAAATTCATTGGAAACTGAGAGTTTTGGTGTGATCCCACATAATTACGTTGATGGCTTAATCTCAGGCCTTGATGATTGTTCAGAATTCCCGGAATATACTGACATTGGATAG 6150 0.4143 MASKGPRSKIDHETRAKRQKALEAPREPRRPKTHWDHVIEEMVWLSKDFESERKWKLAQAKKVALRASKGMLDPATRGEKKMKEEEQRLRKVALNISKDVKKFWTKIEKLVLYKHQMELDVKKKKALDKQLEFLLGQTERYSTMLAENLVDAIKPVEKQLSERHKSTQYKGVDEDIINKFNKAGDDFQSDAVDNDEEYNVQSDDESEDDEQTLEEDEALVTEEERKEELAALHDEVDLPLEELLKRYSGEKEGSDSRGSSPEQREDDNKIVRADDGNGKGQAPENGDIHLSVSKIDSSNSSMVPGRRCDESNGGQTTSAKNLSTDKTCQSENLKQISSERATEDFAYDFSDEEEDGDFLLATEDKDDERTLSEEEKLEKEDAIDPKDEIALLQKESDMPVEELLAMYRKYSSDDEHGEDESDDTSALSEDLLDSSLHEDGGKKDPAVSVDEDVKPVEQLAAVQCQAEQQWEAPNESSDGKESENLIADAAAAARSAQPTGNTFSTTKVRTKFPFLLKYPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIALLAHLACERGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWLKPNSFHICITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKVNKEVVDRLHNVLRPFILRRLKQDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASTETQVTLASANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDMQGIDVQISSSVCSMFSPSPFSVVDLRGLGFLFTHLDYSMTSWESDEIKAIETPASSIMERADVNDLQVIRPELKYRKKLHGTNIFEEIQKAIWEERLRQAKERAAASAWWNSLRCKRRPIYSTTLRDLLTIKHPVYDIHEVKSNPISYMYSSKLADVVLSPVERFQRMIDVVEGFMFAIPAARAPPPVCWCSRSETPVFLHPSYKQKCSEVLSPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRRLKSEGHRALIFTQMTKMLDTLEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAKQKRALDDLVIQSGGYNTDFFKKLDPMELFSGHRALAVKNMQKEKHQISGAEVSVTNADVEAALKSAEDEADYMALKKVELEEAVENQEFTEEAIGRLEEDEYINDDDMKVDEPAELGESVSKLSKENAVSDPKEERPLSMAVKEDDVDMLADVKQMAAAAVAAGQAISAFENQLRPIDQYAIRFLEMWDPIIDKAALESEVKIEDTEWELDRIERYKEEMEAEIDEDEEPFVYERWDADFATEAYRQQVEALAQHQLMEELENEARQKEEADEENCDSGKIQTSRDSKPKPKKKPKKTKFKSLKKGSLASESKAMKEELQAEPMSIDDEAVTSLDLVSSNSTMQKKRKKCKFIADGEKEKISKKSKKTKRAPDICASDLDCALLGSPDEHAEPKQCEGIVDFEQKPASRSKMGGKISITPMPVKRVLMIKPEKVKKGNVWSRDCVPSADFWFPQEDAILCAVVHEYGSNWSLVSETLYGMTAGGSYRGRYRHPVHCCERFRELVQKYVLSTLDNANHERINNTSSGKSLLKVTEDNIRMLLDVASEQENREFLLQKHFFALLSSVWKVASHVDRRQNLSPTQNGRCFDRSFFPSIGQHSQNFLKKPSERMTFPNLAQSRNLLAAALDDAGSRQQDDKICVANHGDDVPVTADQLDVTLEIQNEKSDTSLFPSVINLSIQGTEPPPSLNKQTGEDDHFRACGSVAEDRFREAAKACEEDSCGWASSVFSTNDAKAKSGSKIQASGKHKSSTSDSIKPSKSKSKRPSMDPSEMRPQQAEPFFQSVPPFQARDVRFDLTTSTMDDMDRNLSLGLDEENSLETESFGVIPHNYVDGLISGLDDCSEFPEYTDIG 2049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g3147 2049 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 744 1232 IPR027417 -
Bisa07g3147 2049 Gene3D - 1646 1707 - -
Bisa07g3147 2049 MobiDBLite consensus disorder prediction 1932 1949 - -
Bisa07g3147 2049 MobiDBLite consensus disorder prediction 1461 1487 - -
Bisa07g3147 2049 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 532 697 IPR014001 -
Bisa07g3147 2049 ProSiteProfiles HSA domain profile. 22 94 IPR014012 -
Bisa07g3147 2049 Gene3D - 1031 1280 IPR027417 -
Bisa07g3147 2049 MobiDBLite consensus disorder prediction 346 361 - -
Bisa07g3147 2049 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 503 742 IPR027417 -
Bisa07g3147 2049 Coils Coil 1402 1422 - -
Bisa07g3147 2049 FunFam protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X3 766 826 - -
Bisa07g3147 2049 MobiDBLite consensus disorder prediction 1 33 - -
Bisa07g3147 2049 MobiDBLite consensus disorder prediction 190 222 - -
Bisa07g3147 2049 Coils Coil 1262 1299 - -
Bisa07g3147 2049 MobiDBLite consensus disorder prediction 1488 1502 - -
Bisa07g3147 2049 Pfam SNF2-related domain 537 809 IPR000330 GO:0005524|GO:0140658
Bisa07g3147 2049 MobiDBLite consensus disorder prediction 183 426 - -
Bisa07g3147 2049 MobiDBLite consensus disorder prediction 223 274 - -
Bisa07g3147 2049 PANTHER HELICASE SRCAP-RELATED 15 1956 - -
Bisa07g3147 2049 MobiDBLite consensus disorder prediction 362 395 - -
Bisa07g3147 2049 Pfam Helicase conserved C-terminal domain 1066 1174 IPR001650 -
Bisa07g3147 2049 CDD DEXQc_SRCAP 520 742 - -
Bisa07g3147 2049 Coils Coil 1450 1473 - -
Bisa07g3147 2049 MobiDBLite consensus disorder prediction 1313 1335 - -
Bisa07g3147 2049 CDD SF2_C_SNF 1050 1185 - -
Bisa07g3147 2049 Gene3D - 489 765 IPR038718 -
Bisa07g3147 2049 FunFam Photoperiod-independent early flowering 1 490 765 - -
Bisa07g3147 2049 SMART bromneu2 23 94 IPR014012 -
Bisa07g3147 2049 Gene3D - 766 840 - -
Bisa07g3147 2049 ProSiteProfiles Myb-like domain profile. 1650 1703 IPR001005 -
Bisa07g3147 2049 SMART helicmild6 1091 1174 IPR001650 -
Bisa07g3147 2049 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1065 1215 IPR001650 -
Bisa07g3147 2049 MobiDBLite consensus disorder prediction 291 336 - -
Bisa07g3147 2049 FunFam Photoperiod independent early flowering protein 1646 1707 - -
Bisa07g3147 2049 MobiDBLite consensus disorder prediction 1932 1982 - -
Bisa07g3147 2049 MobiDBLite consensus disorder prediction 1503 1522 - -
Bisa07g3147 2049 Pfam HSA domain 27 93 IPR014012 -
Bisa07g3147 2049 MobiDBLite consensus disorder prediction 1950 1966 - -
Bisa07g3147 2049 MobiDBLite consensus disorder prediction 1461 1522 - -
Bisa07g3147 2049 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 1027 1282 - -
Bisa07g3147 2049 SMART ultradead3 516 709 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g3147 Bisa-ChrBisa07 66112402 66128145 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g3147 540 812 RAD5 or RAD16-like Gene Family AT5G43530 28.882 1.73e-28 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bisa07g3147 SNF2_N 9e-70 CL0023