Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g3140 ATGTATCATTCTTCCCAGATGTACGACCCATCATGGGAATCCCACATAGGAATTAGCAATATAGGCAACGTTGGAGGAACAGAACACCCAAGTTTCGAGGCCATTAAATCACCCTTCAACATTGTGCCTCCTCTGCAAACATCATCGGACGCCTTCTGTGGAACTAGAAGGTCCATGAGCTTTCACCATCACAATGTTCCTCCTTCTGTTTGTTCTGAGCTTCCAAAGACTGTAGATTCCTCGCCTCTTCTGTTTCGTCAATCTTCTGAGGATAACTTCACCATTACCACCACGAAATTACATTCTCCTGCACCACCAACCTCTCCATTCAGTTTCTCTAGCTCCCTGCATTCAGTTGTTCAATCTTTCTTGTCCACCACCCATGAAAGTTTTTCTTCTTCTGAGAAACATAGTGGGTTTCCTTCAGATTCAGACGAATACTCTGATTTTCCTGGTGAAGATGAGAAGCCCGTTCAAATTTCCTTCCAGAGAAAACAGTTAGCCTTCAACACTGAGCCAGATAAGCAGTGTTCTATGAGCTCTCCAACACGTAAAAGAAGAATACGATGGACCAAAGATCTTCACGAGTTTTTCATTATGATTGTTAATCGCCTTGGAGGTCCTGAAAAGGCGAAGCCTAAGTCTATACTAGAGATGATGAATTCGAATGTGCTCACCATTTCTCACGTCAAGAGTCATTTACAGAAATATCGATCTACAATAGACATGCGGAAAGCTTTGCAGGGTAAATTTCAACCTCTTGGTATTTCAGAAGGATCTGGAGAAGGAAATAGACTGGACGGGGTCTCTGAGCTTCAACTCCAAATGCGACTCGAAAGGAGCCAAACCAGAAAAAACCAACCTATGGAGGATTTGAAGAAGAGGAAGCTTGACGAGGCTGGGAACGGTGATTTTTCTTCAAAGGAAGAGCTTCGTTTGCTGCTTGACCCGCTGGCTAAATCCCAGCTCGTGGATCTCCTTGCTAAATTAGGGTCCCAATTTCCTTCAGTTGCAGAAGAAATAAAAAGCATTGCAAGTGCAGATCCTGTTCATCGAAAGCTTTTTGTTCGTGGCTTGGCCTGGAATACCACCTCAGAAACCTTGTGTGCTGCATTTCAAGAGCATGGGGAAATTGAGGAAGGGGCTGTGATCTATGATAAAGCAACAGGAAAATCCCGTGGCTATGGTTTTATCACTTTCAAACATATGGAATCAACTCGGCTTGCATTGAGAGCACCTAGCAAGTTAATTGATGGCAGAATGGCTGTATGCAATTTAGCTTGTGAGGGCCTAAGTGGAGCAAGTAGTGCTCCTGATCTTTCCTTAAGGAAGCTGTACATTGGAAGCTTACCACCAGAAGTCACAAGTGAAATGCTGCTTAACTTTTTTGGGAGGCATGGTGAAATAGAGGAAGGTTCAGTTGCATATGACAAGGATACAAATGAATCTCGTGGTTTTGGCTTTGTTACATACAAGACAGCGGAAGCTGCAAAGAAGGCAATAGATGATCCAGAAAAGACTCTGGGGGGGAGAACTGTCATTGTAAAATACGCTGATTCTCATAAAGGTAAAACCGGCCAACCACCATTTTCTGCTGGAGTGGCTCCAATGGCGGCCTTACCTATGGCCCCCGGATATGTGCAGTCCGGAAAGGGACATATTAATGCTGCCCCTGTTGGCTTCACTTACCCTCAAACTGCGGCATCATACCACGCAACTTCTTATGCAAGTCCTACCACTGCACCCACTTATCCTATCCAAGGACAAGTTTCTTATCCTCCAGCTTCCGCCAAGAACGACCCGCTTGGGGTCCCTCCAACTCCACCGCTGGGAATGAACAGCTACCCATATTACTATCCCAAACAATAA 1869 0.4484 MYHSSQMYDPSWESHIGISNIGNVGGTEHPSFEAIKSPFNIVPPLQTSSDAFCGTRRSMSFHHHNVPPSVCSELPKTVDSSPLLFRQSSEDNFTITTTKLHSPAPPTSPFSFSSSLHSVVQSFLSTTHESFSSSEKHSGFPSDSDEYSDFPGEDEKPVQISFQRKQLAFNTEPDKQCSMSSPTRKRRIRWTKDLHEFFIMIVNRLGGPEKAKPKSILEMMNSNVLTISHVKSHLQKYRSTIDMRKALQGKFQPLGISEGSGEGNRLDGVSELQLQMRLERSQTRKNQPMEDLKKRKLDEAGNGDFSSKEELRLLLDPLAKSQLVDLLAKLGSQFPSVAEEIKSIASADPVHRKLFVRGLAWNTTSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITFKHMESTRLALRAPSKLIDGRMAVCNLACEGLSGASSAPDLSLRKLYIGSLPPEVTSEMLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTAEAAKKAIDDPEKTLGGRTVIVKYADSHKGKTGQPPFSAGVAPMAALPMAPGYVQSGKGHINAAPVGFTYPQTAASYHATSYASPTTAPTYPIQGQVSYPPASAKNDPLGVPPTPPLGMNSYPYYYPKQ 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g3140 622 MobiDBLite consensus disorder prediction 279 303 - -
Bisa07g3140 622 CDD RRM2_NsCP33_like 444 518 - -
Bisa07g3140 622 Gene3D - 435 534 IPR012677 -
Bisa07g3140 622 SUPERFAMILY Homeodomain-like 183 241 IPR009057 -
Bisa07g3140 622 NCBIfam myb-like DNA-binding domain, SHAQKYF class 185 239 IPR006447 GO:0003677
Bisa07g3140 622 FunFam Two-component response regulator 181 244 - -
Bisa07g3140 622 MobiDBLite consensus disorder prediction 283 303 - -
Bisa07g3140 622 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 354 420 IPR000504 GO:0003723
Bisa07g3140 622 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 445 513 IPR000504 GO:0003723
Bisa07g3140 622 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 352 429 IPR000504 GO:0003723
Bisa07g3140 622 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 443 520 IPR000504 GO:0003723
Bisa07g3140 622 FunFam UBP1-associated protein 2C-like 348 429 - -
Bisa07g3140 622 MobiDBLite consensus disorder prediction 131 154 - -
Bisa07g3140 622 SUPERFAMILY RNA-binding domain, RBD 351 429 IPR035979 GO:0003676
Bisa07g3140 622 SMART rrm1_1 444 516 IPR000504 GO:0003723
Bisa07g3140 622 SMART rrm1_1 353 425 IPR000504 GO:0003723
Bisa07g3140 622 FunFam UBP1-associated protein 2C 430 528 - -
Bisa07g3140 622 Gene3D - 275 434 IPR012677 -
Bisa07g3140 622 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 235 420 - -
Bisa07g3140 622 SUPERFAMILY RNA-binding domain, RBD 438 532 IPR035979 GO:0003676
Bisa07g3140 622 Gene3D - 184 240 - -
Bisa07g3140 622 Pfam Myb-like DNA-binding domain 189 238 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g3140 Bisa-ChrBisa07 65967445 65975990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g3140 435 554 C2H2 Transcription Factor Family AT2G19380 34.646 1.60e-15 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Bisa07g3140 RRM_1 3.9e-16 CL0221