Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g3109 ATGGCTGACCCTTTCTCTGATTTCTTCTCTAATTTCCAATTCAACCCCATCCCCCATTATTACTACCCTCCTCCTCCTCCTCTTCCTCAGTCTCAATCTCAGCATCCCCATCTCCACAACTTCCTCATCTCTTCCCCTCCTCACTCCCCTCCCCTCAGAGAACCTCTTCCCCTCCTCTCTTGCACTCCCATGGACGTGGAGGACTCTTCTGCTACGAGGCCCAAGGAGGAAGACGAAGATGATGAGTTAGAAGAGGAAGATCAGGAGGATGAGAGTGCCAGCGTGACTGTTGCACTCCACATAGGGTTGCCTAGCCCTTCTCCTGCTGAGATGGCTTCCCTCTTATCTTCTAATCCTTCCTCCATCTCCATGGATAAACAACCCCCAGAAGCAGAAGATCATTCTTGTCCCTCAGGCCTCTCGCGGCTCAACAAGGGTCAGTACTGGATCCCTACCCCTTCCCAGATTCTCATTGGTCCTACCCAGTTCTCTTGCCCTGTTTGCTCCAAAACCTTCAACCGCTACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCAGAATCACTTCGGGGAACCCAACCAACGGGAATGCTGAGGCTTCCATGCTATTGCTGCGCCCCAGGGTGCAGGAACAACATCGACCACCCTCGAGCCAAGCCCCTCAAGGACTTCCGAACCCTTCAGACACACTACAAGCGCAAGCATGGCATCAAGCCCTTCATGTGCCGCAAGTGTGGCAAGGCCTTCGCTGTCAGAGGCGACTGGAGAACCCACGAGAAGAACTGCGGGAAGCTCTGGTACTGCATCTGTGGCTCTGATTTCAAGCACAAGAGGTCCCTCAAAGACCATATCAAGGCCTTTGGGAGTGGCCATGCTGCTTATGGGGTCGATGGCTTCGAGGAAGAAGATGATCCAGCTTCTGAAGTAGAGCAAGATAATGAGTCCGCTCAGTCATGA 978 0.5286 MADPFSDFFSNFQFNPIPHYYYPPPPPLPQSQSQHPHLHNFLISSPPHSPPLREPLPLLSCTPMDVEDSSATRPKEEDEDDELEEEDQEDESASVTVALHIGLPSPSPAEMASLLSSNPSSISMDKQPPEAEDHSCPSGLSRLNKGQYWIPTPSQILIGPTQFSCPVCSKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGVDGFEEEDDPASEVEQDNESAQS 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g3109 325 ProSiteProfiles Zinc finger C2H2 type domain profile. 163 190 IPR013087 -
Bisa07g3109 325 Gene3D Classic Zinc Finger 225 301 - -
Bisa07g3109 325 SUPERFAMILY beta-beta-alpha zinc fingers 229 267 IPR036236 -
Bisa07g3109 325 PANTHER ZINC FINGER PROTEIN WIP2 23 321 IPR043584 GO:0003700|GO:0010468
Bisa07g3109 325 Gene3D Classic Zinc Finger 162 185 - -
Bisa07g3109 325 SMART c2h2final6 163 185 IPR013087 -
Bisa07g3109 325 SMART c2h2final6 247 267 IPR013087 -
Bisa07g3109 325 MobiDBLite consensus disorder prediction 74 92 - -
Bisa07g3109 325 MobiDBLite consensus disorder prediction 23 138 - -
Bisa07g3109 325 ProSitePatterns Zinc finger C2H2 type domain signature. 165 185 IPR013087 -
Bisa07g3109 325 Pfam Zinc finger, C2H2 type 163 182 IPR013087 -
Bisa07g3109 325 MobiDBLite consensus disorder prediction 303 325 - -
Bisa07g3109 325 FunFam zinc finger protein WIP2-like 162 185 - -
Bisa07g3109 325 FunFam Zinc finger protein WIP2 216 298 - -
Bisa07g3109 325 SUPERFAMILY beta-beta-alpha zinc fingers 159 185 IPR036236 -
Bisa07g3109 325 ProSiteProfiles Zinc finger C2H2 type domain profile. 247 267 IPR013087 -
Bisa07g3109 325 MobiDBLite consensus disorder prediction 110 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g3109 Bisa-ChrBisa07 65358872 65361067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g3109 1 325 C2H2 Transcription Factor Family AT3G57670 60.733 2.16e-142 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bisa07g3109 zf-C2H2 0.0039 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa03g2329 03 34108488 34110226 Bisa07g3109 07 65358872 65361067 CCT
Bisa07g3109 07 65358872 65361067 Bisa07g3109 07 65358872 65361067 ECH