Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g3103 ATGCAGTTCTTTCTCGTTCTACTATCCTCACACCAGCAAAGCAAAACTGCAGCAGCAGCAGTGGCAATGGAGAAAGCGAACGCTAAGAAGAAAGCATCAGCTCTCTCTCTGGAGCAATTCATCTCAATCATGTCCCCTCTTATTGATTTGGAAAAGGAGGCTGAGATATCAAGCTCAATCACCACAGGCGCGTCTAGAAATTTGGATACTGCTCAAAAAAGGGGCTCTACAATCCTCAATTTGAAGTGTGTTGATGTCCAGACAGGACTTATGGGGAAATCTCTTGTTGAGTTCCAGTCTACAAAAGGGGATGTTCTTCCTGCACACAAGTTTAGTCCACATGATGTTGTTATTCTAAAACTCAGCAAGGCTGATTTAGGGTCCCCTGCTCTTGGACAGGGTGTAGTTTACCGGTTAAAGGACTCCTCAATAACGGTTGCTTTTGATGATATACCAGAAGATGGTTTAAATAGTCCCCTAAGGTTGGAGAAGGTTGGAAATGAGGTGACATACCGTAGGATGAAGGATGTATTAATACAGTTGAGTAAAGGAGTACATAAGGGTCCTGCTGCTGATCTAATTCCCATCCTGTTTGGGGAGAGGCTGCCAATAATGTCCAAGAAGGCTGTCTCATTCACTCCATTTAACCCCAACCTTGATCACTCTCAGAAGGATGCAATCTCAAAGGCCCTATCATCAAAGGATATTTTTTTGCTACATGGCCCCCCTGGAACGGGAAAAACTACAACAGTGGTGGAAATTATATTACAAGAAGTTAAGCGTGGATCAAAGATTCTTGTTTGTGCTGCCTCAAATATTGCTGTTGACAACATTGTTGAGCGACTTGTTCCATGCAGAGTTAAGCTGGTGAGATTGGGTCATCCTGCTCGTTTATTGCCTCAAGTACTGGACAGTGCACTGGATGCTCAGGTTCTTCGAGGAGATAATAGTTCACTTGCAAATGACATTCGGAAGGAAATGAAGGCATTAAATGGGAAGTTGCTGAAAACCAAAGACAGAAATACAAGGAGGGACATTCAGAAAGAACTTAGGACTCTGTCCAAAGAAGAACGCAAAAGGCAACAGCTAGCTGTAGCGGATGTAATTAAAAGTGCAGATGTGGTATTAACCACTTTGATTGGGGCTTTTGCTAAGAAGCTGGATAATACTTCATTTGACTTGGTGATTATCGATGAAGCAGCCCAAGCACTTGAGATAGCATGCTGGATACCTATGCTGAAGGGTTCAAGATGTATACTTGCAGGGGACCATCTTCAACTCCCACCAACTATTCAAAGTGTTGAAGCTGAGAAGAAAGGATTGGGAAGAACCCTCTTTGAACGACTTGCAGATATGTATGGAGAAGTCACTTCTATGCTTACTGTCCAGTACCGCATGCATGAACTTATCATGGAGTGGTCTTCTAAAGAACTTTACAACAGCAAGGTCAAAGCCCATGCAAGTGTCGCTGCACATATGCTGTATGATCTTGAGGATGTGAAGAGGACCTCCTCAACTGAACCAACCCTTCTTCTCATAGACATAGCTGGGTGTGACATGGAAGAAAAGAAAGATGAAGAAGACAGCACCCTGAATGAAGGTGAGGCTGAAGTTGCCATGGCCCATGCAAAGAGACTAGTGCAGAGTGGCATGCTGCCATCTGATATTGGAATCATCACCCCATACGCTGCACAGGTTGTTTTACTCAAGATGTTAAAAAGCAAGGAGAACTCGCTGAAGGATGTTGAAATCTCAACAGTTGATGGCTTCCAGGGAAGGGAGAAGGAAGCCATTATTATATCAATGGTTAGATCAAATTCAAAAAAAGAGGTGGGCTTTCTGAGTGATCGTCGCCGAATGAACGTTGCTGTGACACGGGCAAGGAGGCAATGCTGTCTTGTCTGCGACACAGAGACAGTCACCAGTGATGGATTTCTTAAACGATTGATTGAGTATTTTGAAGAGAATGGCGAGTATCAGAGTGCATCCGAGTATCAGAACGAATAG 2007 0.4375 MQFFLVLLSSHQQSKTAAAAVAMEKANAKKKASALSLEQFISIMSPLIDLEKEAEISSSITTGASRNLDTAQKRGSTILNLKCVDVQTGLMGKSLVEFQSTKGDVLPAHKFSPHDVVILKLSKADLGSPALGQGVVYRLKDSSITVAFDDIPEDGLNSPLRLEKVGNEVTYRRMKDVLIQLSKGVHKGPAADLIPILFGERLPIMSKKAVSFTPFNPNLDHSQKDAISKALSSKDIFLLHGPPGTGKTTTVVEIILQEVKRGSKILVCAASNIAVDNIVERLVPCRVKLVRLGHPARLLPQVLDSALDAQVLRGDNSSLANDIRKEMKALNGKLLKTKDRNTRRDIQKELRTLSKEERKRQQLAVADVIKSADVVLTTLIGAFAKKLDNTSFDLVIIDEAAQALEIACWIPMLKGSRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLADMYGEVTSMLTVQYRMHELIMEWSSKELYNSKVKAHASVAAHMLYDLEDVKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTLNEGEAEVAMAHAKRLVQSGMLPSDIGIITPYAAQVVLLKMLKSKENSLKDVEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVTSDGFLKRLIEYFEENGEYQSASEYQNE 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g3103 668 NCBIfam IGHMBP2 family helicase 367 663 IPR004483 GO:0003677|GO:0005524
Bisa07g3103 668 Gene3D - 46 449 IPR027417 -
Bisa07g3103 668 Pfam AAA domain 219 433 IPR041677 GO:0004386
Bisa07g3103 668 SMART AAA_5 233 451 IPR003593 GO:0016887
Bisa07g3103 668 FunFam P-loop containing nucleoside triphosphate hydrolase 464 668 - -
Bisa07g3103 668 Pfam AAA domain 442 637 IPR041679 -
Bisa07g3103 668 CDD SF1_C_Upf1 466 654 IPR047187 -
Bisa07g3103 668 SMART ultradead3 215 465 IPR014001 -
Bisa07g3103 668 FunFam DNA-binding protein SMUBP-2 63 165 - -
Bisa07g3103 668 Gene3D - 63 165 - -
Bisa07g3103 668 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 214 642 IPR027417 -
Bisa07g3103 668 Coils Coil 320 340 - -
Bisa07g3103 668 CDD DEXXQc_SMUBP2 218 465 - -
Bisa07g3103 668 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 20 667 - -
Bisa07g3103 668 Gene3D - 464 668 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g3103 Bisa-ChrBisa07 65246716 65253655 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g3103 192 402 Core DNA Replication Machinery Family AT1G08840 28.436 9.57e-13 69.7