Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g3100 ATGAATCACTTGACCGTTGAGACCGAAGATTGCTTTGCAAGCTTGCTTGAGCTTGCAGCCAATAATGATGTTGAGCGTTTCAAATATTCAATTGAACGTGATCCTTCCTGTGTAGACGAAGTTGGGCTATGGTACGGTCGTCAGAAGGGGTCAAAGCAGATGGTCAATGAGCACAGGACACCTTTGATGGTTGCTGCTACTTATGGTAGCATCGATGTCATAAAGTTGATTCTTTCACTATCTGATGCAGATATTAACCGATCTTGCGGCGGCGACAAAAGCACTGCCCTTCATTGTGCAGCCTCAGGTGGGGCTTTAAATGCTGTTGATGTTATGAAGCTGCTTCTAGCAGCCGGTGCTGATCCAAATTCTGTGGATGCCAATGGTCATTTTCCAGTTGATGTCATTGTTGTACCTCCTAAGCTTGAACATGTCAGAAGTATTCTTGAAGAACTTCTTCAAACTGATGGTTCCATGGCAGGGTGTAATCTTAGGGTGATAACAGGGACATCAAATATAAATTCTTCCCCTTTGTCAACTTCTCCAGATAATGGGTCTCCATCTGCTCCGGATTTTCAATTGAAGCTAAAGTTAAATGAAGACCCTAATTTTTCTGCATCAGAGAAGAAAGAATATCCTGTAGATCCATCTCTTCCTGACATCAAGAACAGCATATATTCAACTGATGAGTTCCGAATGTATTCTTTCAAGGTACGGCCTTGTTCCCGTGCTTATTCACATGATTGGACTGAATGCCCATTTGTCCACCCAGGGGAGAATGCTCGTAGGAGGGACCCAAGGAAGTTTCATTATAGCTGTGTCCCTTGTCCTGATTTTCGGAAAGGAGCATGCCGTCGTGGAGATTTGTGTGAATATGCTCATGGGGTTTTTGAGTGCTGGCTGCATCCAGCGCAATATCGAACCCGCCTCTGCAAGGATGGGACAAATTGCTCAAGAAGGGTTTGCTTCTTTGCCCACACTGCTGAGGAACTTCGTCCCTTATATGTTTCAACTGGTTCTGCTGTTCCTTCGCCACGCTCAAGCACTTCATCAGCCATGGATTTTGCTGCAGCCATGAGCATGTTGCCTGGCTCCCCGTCCTCGATGTCTGTCATGTCTCCTTCACCATTCACTCCGCCTATGTCACCGTCCGCAAATGGCATGTCACACTCTTCTGTTGCCTGGCCCCAACCTAATGTCCCAACCCTGCATCTTCCAGGAAGTAATCTTCAATCCAGTCGTTTGAGATCTTCTTTCAGTGCTAGAGATATTCCTGTGGAGGACTTTGATTTGTTGTCTGACTATGATGTTCAGCAACAACAGCTACTTAATGAGTTTTCTTGCCTTTCCCAGCAATCTATGAATTCTAATAATTTAAACCGCTCTGGTCGTATAAAGACCTTGACCCCTTCAAATCTTGATGACCTCTTCTCTGCTGAAAGCTCTTCCCCTCGTTTTGCTGATCCAACATTGAGTTCGGCTGTTTTTTCTCCCACACACAAATCAGCTCTCCTTAATCAATTTCAGCAGCAGCAAAGCTTTCTGTCACCTGTGAATACAAATTTTTCTTCCAAGAATGCTGATCATTCTCTATTACAGACCTCGTTTGGGGTTCAGACATCAGGAAGGATGTCTCCCCGCACCGTCGAACCTATATCACCAATGAGCTCAAGGGTTTCTATGTTAGCTCAACGTGAGAAGCAGCAACAGTTTCGTAGCCTTAGCTCCCGGGAACTTGGCTGCAACTCTGCTGCCGTTGCTGCTGCTGCTGCTGCTGCTGGTGGTGGTGGTTTCTCTGACAATTCTTGGTCTAAGTGGGGATCCACCAACGGTAAATTGGATTGGGCTGTCGATGCTGATGAATTAGGTAAGCTCCGTAGATCCTCTTCATTTGAGTTTGGGAACAATGGTGAGGAGCCTGATTTATCATGGGTGCAATCACTCGTGAAAGAATCTCCAACTGAGGTTAAGGAGAAATTAGGAACGGCCGTCACAAGTGTTGCAGCGGCTGGATACCCTGGCGAGGATCAAATTTGA 2037 0.4585 MNHLTVETEDCFASLLELAANNDVERFKYSIERDPSCVDEVGLWYGRQKGSKQMVNEHRTPLMVAATYGSIDVIKLILSLSDADINRSCGGDKSTALHCAASGGALNAVDVMKLLLAAGADPNSVDANGHFPVDVIVVPPKLEHVRSILEELLQTDGSMAGCNLRVITGTSNINSSPLSTSPDNGSPSAPDFQLKLKLNEDPNFSASEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDLCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSSAMDFAAAMSMLPGSPSSMSVMSPSPFTPPMSPSANGMSHSSVAWPQPNVPTLHLPGSNLQSSRLRSSFSARDIPVEDFDLLSDYDVQQQQLLNEFSCLSQQSMNSNNLNRSGRIKTLTPSNLDDLFSAESSSPRFADPTLSSAVFSPTHKSALLNQFQQQQSFLSPVNTNFSSKNADHSLLQTSFGVQTSGRMSPRTVEPISPMSSRVSMLAQREKQQQFRSLSSRELGCNSAAVAAAAAAAGGGGFSDNSWSKWGSTNGKLDWAVDADELGKLRRSSSFEFGNNGEEPDLSWVQSLVKESPTEVKEKLGTAVTSVAAAGYPGEDQI 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g3100 678 Gene3D - 271 333 - -
Bisa07g3100 678 Gene3D - 1 212 IPR036770 -
Bisa07g3100 678 Pfam Ankyrin repeats (3 copies) 50 126 IPR002110 GO:0005515
Bisa07g3100 678 FunFam Zinc finger CCCH domain-containing protein 66 228 296 - -
Bisa07g3100 678 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Bisa07g3100 678 SMART c3hfinal6 305 328 IPR000571 GO:0046872
Bisa07g3100 678 SMART c3hfinal6 270 296 IPR000571 GO:0046872
Bisa07g3100 678 SMART ANK_2a 92 124 IPR002110 GO:0005515
Bisa07g3100 678 SMART ANK_2a 57 87 IPR002110 GO:0005515
Bisa07g3100 678 SUPERFAMILY Ankyrin repeat 15 146 IPR036770 -
Bisa07g3100 678 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Bisa07g3100 678 ProSiteProfiles Zinc finger C3H1-type profile. 275 297 IPR000571 GO:0046872
Bisa07g3100 678 MobiDBLite consensus disorder prediction 173 193 - -
Bisa07g3100 678 MobiDBLite consensus disorder prediction 173 188 - -
Bisa07g3100 678 PANTHER UNKEMPT FAMILY MEMBER 17 652 IPR045234 -
Bisa07g3100 678 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 275 295 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g3100 Bisa-ChrBisa07 65228681 65230717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g3100 6 652 C2H2 Transcription Factor Family AT5G12850 55.255 0.0 683
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bisa07g3100 Ank_2 1.3e-09 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa07g3100 07 65228681 65230717 Bisa07g3100 07 65228681 65230717 ECH