LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa07g3096	ATGGTAATGGAAGGCAAAACGAGTTCATTTTTGCCATCATTCGCTGATTACCGTCATGCTGTTCAACCCAGAAAAGAGGAGGACGCTACCACGGAAAAAGAAGGTAAAAGAGATGAAGAACATCAACATTTTGTTTCTAGTTTGCCTTCAACAGCAAATCAATTTTTTGCACAGCCATCTCAGTTGGAGCTTGTTGGCCACTCAATCGCATGTGCCTCTTACCCGTGTTCAGATCCAAATTATGTAGGAGTGACCCCTACTCATGGACCTCAGCCTTTGGTACATCCCCAGAGTCTAGGAGTACATTCTGCTCGAGTGGTCTTGCCACTGGAAATGGCAGAGGAGCCTGTTTATGTTAATGCCAAGCAATACCATGGAATTTTGAGGCGTAGGCAATCACGTGCCAAGGCTGAGTTGGCAAAGAAGCTGATAAAAGATAGAAAGCCCTACCTTCACGAGTCTCGACATTTGCATGCAATGAGAAGAGCAAGAGGGTGTGGAGGCCGTTTCCTGACCACAAAGAAGCCTGATAGTGATACTGCAGACACAAGAACCAACAAAAAGGAAACTGCTACCGCTACTTCTGATTCAAACTCCCGGCTTCAGGGATTTGAGGTTGAAGGGGACTGCTCGGGACACCAGTCTGGCAGACTCAACTTCACTGGGGTTCGCAGTGCCCTCACCATAAAATAG	693	0.469	MVMEGKTSSFLPSFADYRHAVQPRKEEDATTEKEGKRDEEHQHFVSSLPSTANQFFAQPSQLELVGHSIACASYPCSDPNYVGVTPTHGPQPLVHPQSLGVHSARVVLPLEMAEEPVYVNAKQYHGILRRRQSRAKAELAKKLIKDRKPYLHESRHLHAMRRARGCGGRFLTTKKPDSDTADTRTNKKETATATSDSNSRLQGFEVEGDCSGHQSGRLNFTGVRSALTIK	230

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa07g3096	230	ProSiteProfiles	NF-YA/HAP2 family profile.	113	173	IPR001289	GO:0003700\|GO:0006355
	Bisa07g3096	230	MobiDBLite	consensus disorder prediction	19	44	-	-
	Bisa07g3096	230	MobiDBLite	consensus disorder prediction	187	204	-	-
	Bisa07g3096	230	Pfam	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B	115	170	IPR001289	GO:0003700\|GO:0006355
	Bisa07g3096	230	SMART	cbf3	112	173	IPR001289	GO:0003700\|GO:0006355
	Bisa07g3096	230	PANTHER	TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED	28	196	IPR001289	GO:0003700\|GO:0006355
	Bisa07g3096	230	MobiDBLite	consensus disorder prediction	168	217	-	-
	Bisa07g3096	230	ProSitePatterns	NF-YA/HAP2 subunit signature.	118	138	IPR018362	GO:0003677\|GO:0016602
	Bisa07g3096	230	PRINTS	CCAAT-binding transcription factor subunit B signature	116	138	IPR001289	GO:0003700\|GO:0006355
	Bisa07g3096	230	PRINTS	CCAAT-binding transcription factor subunit B signature	147	170	IPR001289	GO:0003700\|GO:0006355
	Bisa07g3096	230	Gene3D	-	113	174	-	-
	Bisa07g3096	230	MobiDBLite	consensus disorder prediction	14	45	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa07g3096	Bisa-ChrBisa07	65175869	65180232	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa07g3096	47	199	CCAAT-HAP2 Transcription Factor Family	AT5G12840	53.247	2.34e-44	148

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NF-YA	Bisa07g3096		CBFB_NFYA	1.1e-26	No_clan