Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g3089 ATGGATTTTGGAGTTTCGAATACAGACACATTCTATCTGATGCACTTCGCTGTCACGCTTTCAGAGAAGGAGCGTGATTCGGAGAATTCCGACGAGGCGACGACTCCCTCCCCCGGAATCCTGGTGGTGGCATCGTCGTCTTCCTATCTACGCAGAAACCAATTATTCAGATCCTTCAATTCCCAAATTCGCTGTAAAACCCAAATCAATTTTTCTTTTTTCAATTCATTTCTAAATTCTCTGCGTTGTCCTCGTCGTTCATTTCGGATGGGGACTCCCGAATTCCCTGATCTAGGGAAGCATTGTTCCCTTGATAATTGCAGCCAGCTCGATTTTTTACCCTTCACTTGTGATGGCTGTAAAAAGGTATACTGTTTGGAGCATCGCAGTTATGCCGAACATAATTGTCCGAAATCTAACAGAGGAGATGTCACTGTTGTTATATGTCCACTTTGTGCCAAAGGAGTACGCCTAATTCCTGATCAAGATCCAAACATAACTTGGGACAATCACGTTAACACCGAGTGTGACCCCTCAAACTATGAGAAAGCCAAGAAGAGAAAATGCCCTGCCCCTCGATGCAAAGAGATCTTGGTATTCTCAAACACGATAAAGTGTAAGGACTGCCACATAGACCATTGTTTGAAGCACCGGTTTGGACCTGATCACAAATGTCCTGGCCCCAGAAAGATGGAACCAAGCTTTTCATTTAATAGCTTTCTGAATAAAAGTGGAAGCGAGAAATCAAAGCCCAGTTCGAGCTCAACAAAGCCGCCTAGACGCGCCTCGAGCTTTCTCGATGTAGCTTCCTGCATTAGAGCTTCAGCAGAAGCAGGCATGACAAAACTGAGTGGTGAAATCAGCCAAGCTTGGCACACAGCAATGGATAGGATGGGACACAGCAGAAATATAAATGGTGAAGTGGAGCAATGCCCTCATTGTGGAACCAAGTTTTCCTCAGTCTCTTGTTTGGTTGATCATGTGCAGAAGGTTCATGAAAAGAATGGGAAGCCATCTCAAGTGACGAAGAAGGAGGTCACAATTGATGTGTGTCCTAAGTGTAGCAAAGGCTTTCGAGACCCAGTTGATCTTGTGGCTCATGTTGAGAGGGAACATGCTGGTACTTCAAGAGCATAG 1137 0.4503 MDFGVSNTDTFYLMHFAVTLSEKERDSENSDEATTPSPGILVVASSSSYLRRNQLFRSFNSQIRCKTQINFSFFNSFLNSLRCPRRSFRMGTPEFPDLGKHCSLDNCSQLDFLPFTCDGCKKVYCLEHRSYAEHNCPKSNRGDVTVVICPLCAKGVRLIPDQDPNITWDNHVNTECDPSNYEKAKKRKCPAPRCKEILVFSNTIKCKDCHIDHCLKHRFGPDHKCPGPRKMEPSFSFNSFLNKSGSEKSKPSSSSTKPPRRASSFLDVASCIRASAEAGMTKLSGEISQAWHTAMDRMGHSRNINGEVEQCPHCGTKFSSVSCLVDHVQKVHEKNGKPSQVTKKEVTIDVCPKCSKGFRDPVDLVAHVEREHAGTSRA 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g3089 378 SUPERFAMILY beta-beta-alpha zinc fingers 310 368 IPR036236 -
Bisa07g3089 378 ProSiteProfiles Zinc finger AN1-type profile. 96 144 IPR000058 GO:0008270
Bisa07g3089 378 SUPERFAMILY AN1-like Zinc finger 89 139 IPR035896 -
Bisa07g3089 378 MobiDBLite consensus disorder prediction 242 261 - -
Bisa07g3089 378 ProSitePatterns Zinc finger C2H2 type domain signature. 351 372 IPR013087 -
Bisa07g3089 378 ProSiteProfiles Zinc finger C2H2 type domain profile. 349 377 IPR013087 -
Bisa07g3089 378 Gene3D Classic Zinc Finger 302 378 - -
Bisa07g3089 378 ProSiteProfiles Zinc finger AN1-type profile. 183 233 IPR000058 GO:0008270
Bisa07g3089 378 ProSiteProfiles Zinc finger C2H2 type domain profile. 309 337 IPR013087 -
Bisa07g3089 378 Pfam AN1-like Zinc finger 189 228 IPR000058 GO:0008270
Bisa07g3089 378 Pfam AN1-like Zinc finger 102 140 IPR000058 GO:0008270
Bisa07g3089 378 SUPERFAMILY AN1-like Zinc finger 181 231 IPR035896 -
Bisa07g3089 378 SMART AN1_Zf_4 189 230 IPR000058 GO:0008270
Bisa07g3089 378 SMART AN1_Zf_4 102 141 IPR000058 GO:0008270
Bisa07g3089 378 MobiDBLite consensus disorder prediction 242 262 - -
Bisa07g3089 378 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 94 338 - -
Bisa07g3089 378 Pfam Zinc finger, C2H2 type 350 372 IPR013087 -
Bisa07g3089 378 SMART c2h2final6 349 372 IPR013087 -
Bisa07g3089 378 SMART c2h2final6 309 332 IPR013087 -
Bisa07g3089 378 ProSitePatterns Zinc finger C2H2 type domain signature. 311 332 IPR013087 -
Bisa07g3089 378 Gene3D - 169 264 IPR035896 -
Bisa07g3089 378 FunFam AN1-type zinc finger protein 2B isoform X1 92 153 - -
Bisa07g3089 378 Gene3D - 90 147 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g3089 Bisa-ChrBisa07 65039136 65043374 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g3089 90 378 C2H2 Transcription Factor Family AT2G41835 61.301 1.09e-121 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bisa07g3089 zf-AN1 4.9e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa03g2362 03 34708233 34710634 Bisa07g3089 07 65039136 65043374 CCT
Bisa07g3089 07 65039136 65043374 Bisa07g3089 07 65039136 65043374 ECH